CRC 873Publications

Overview

Section A: Mechanisms of Stem Cell Self-Renewal

A01 Thomas Holstein
A03 Joachim Wittbrodt
A06 Michael Boutros
A11 Lázaro Centanin
A12 Claudia Scholl, Hanno Glimm
A14 Gislene Pereira
A16 Gergana Dobreva
A17 Henrik Kaessmann

Section B: Cell-cell interactions in the stem cell niche

B01 Jan Lohmann
B02 Ingrid Lohmann
B03 Christof Niehrs
B04 Andreas Trumpp
B07 Motomu Tanaka, Sascha Dietrich
B08 Anna Marciniak-Czochra
B09 Ana Martin-Villalba
B11 Hans-Reimer Rodewald, Thomas Höfer
B12 Thomas Greb
B13 Marieke Essers, Michael Milsom
B14 Carmen Ruiz de Almodóvar

Core Projects

Z01 Jan Lohmann
Z02 Volker Eckstein, Carsten Müller-Tidow
Z03 Ulrike Engel
Z04 Henrik Kaessmann, Jan Lohmann

Table filters

Table

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A01	Veschgini M, Petersen HO, Abuillan W, Rossetti FF, özbek S, Burghammer M, Holstein TW, Tanaka, M. Spatio-temporal elasticity pattern in extracellular matrix during Hydra morphogenesis. Mol Biol Evol. 2015 Aug	2015 Aug	http://www.ncbi.nlm.nih.gov/pubmed/25841488
A01	Lommel M, Tursch A, Rustarazo-Calvo L, Trageser B, Holstein TW. Genetic knock-down and knock-out approaches in Hydra. bioRxiv 230300 doi: https://doi.org/10.1101/230300	2017 Dec	https://www.biorxiv.org/content/early/2017/12/07/230300
A01	Veschgini M, Gebert F, Khangai N, Ito H, Suzuki R, Holstein TW, Mae Y, Arai T and Tanaka M. Tracking mechanical and morphological dynamics of regenerating Hydra tissue fragments using a two fingered micro-robotic hand. Appl. Phys. Lett. 108, 103702 (2016)	2016 Mar	http://aip.scitation.org/doi/abs/10.1063/1.4943402
A01	Petersen HO, Höger SK, Looso M, Lengfeld T, Kuhn A, Warnken U, Nishimiya-Fujisawa C, Schnölzer M, Krüger M, özbek S, Simakov O and Holstein TW. A Comprehensive Transcriptomic and Proteomic Analysis of Hydra Head Regeneration. Mol Biol Evol. 2015 Aug	2015 Aug	http://www.ncbi.nlm.nih.gov/pubmed/25841488
A01	Watanabe H, Kuhn A, Fushiki M, Agata K, özbek S, Fujisawa T and Holstein TW. Sequential actions of beta-catenin and Bmp pattern the oral nerve net in Nematostella vectensis. Nat Commun. 2014 Dec 23	2014 Dec	http://www.ncbi.nlm.nih.gov/pubmed/25534229
A01	Watanabe H, Schmidt HA, Kuhn A, Höger SK, Kocagöz Y, Laumann-Lipp N, özbek S and Holstein TW. Nodal signalling determines biradial asymmetry in Hydra. Nature. 2014 Nov 6	2014 Nov	http://www.ncbi.nlm.nih.gov/pubmed/25156256
A01	Assmann M, Kuhn A, Dürrnagel S, Holstein TW, Gründer S. The comprehensive analysis of DEG/ENaC subunits in Hydra reveals a large variety of peptide-gated channels, potentially involved in neuromuscular transmission. BMC Biol. 2014 Oct 14	2014 Oct	http://www.ncbi.nlm.nih.gov/pubmed/25312679
A01	Holstein TW. The evolution of the Wnt pathway. Cold Spring Harb Perspect Biol. 2012 Jul	2012 Jul	https://www.ncbi.nlm.nih.gov/pubmed/22751150
A01	Somorjai IM, Lohmann JU, Holstein TW, Zhao Z. Stem cells: a view from the roots. Biotechnol J. 2012 Jun	2012 Jun	https://www.ncbi.nlm.nih.gov/pubmed/22581706
A01	Holstein TW, Watanabe H, Ozbek S. Signaling pathways and axis formation in the lower metazoa. Curr Top Dev Biol. 2011	2011	https://www.ncbi.nlm.nih.gov/pubmed/22074605
A01	Nakamura Y, Tsiairis CD, Ozbek S, Holstein TW. Autoregulatory and repressive inputs localize Hydra Wnt3 to the head organizer. Proc Natl Acad Sci USA. 2011 May	2011 May	https://www.ncbi.nlm.nih.gov/pubmed/21576458
A02	Jin Y, Patel P, Kohlmaier A, Pavlovic B, Zhang C, Edgar BA. Intestinal stem cell pool regulation in Drosophila. Stem Cell Reports. 2017 Jun	2017 Jun	https://www.ncbi.nlm.nih.gov/pubmed/28479306
A02	Xiang J, Bandura J, Zhang P, Jin Y, Reuter H, Edgar BA. EGFR-dependent TOR-independent endocycles support Drosophila gut epithelial regeneration. Nat Commun. 2017 May	2017 May	https://www.ncbi.nlm.nih.gov/pubmed/28485389
A02	Zhou J, Edgar BA, Boutros M. ATF3 acts as a rheostat to control JNK signaling during intestinal regeneration. Nature Commun 8:14289. 2017 Mar	2017 Mar	https://www.nature.com/articles/ncomms14289
A02	Jin Y, Ha N, Forés M, Xiang J, Gläßer C, Maldera J, Jiménez G, Edgar BA. EGFR/Ras Signaling Controls Drosophila Intestinal Stem Cell Proliferation via Capicua-Regulated Genes. PLoS Genet. 2015 Dec 18	2015 Dec	http://www.ncbi.nlm.nih.gov/pubmed/26683696
A02	Patel PH, Dutta D, Edgar BA. Niche appropriation by Drosophila intestinal stem cell tumours. Nat Cell Biol. 2015 Sep	2015 Sep	http://www.ncbi.nlm.nih.gov/pubmed/26237646
A02	Dutta D, Buchon N, Xiang J, Edgar BA. Regional Cell Specific RNA Expression Profiling of FACS Isolated Drosophila Intestinal Cell Populations. Curr Protoc Stem Cell Biol. 2015 Aug 3	2015 Aug	http://www.ncbi.nlm.nih.gov/pubmed/26237570
A02	Dutta D, Dobson AJ, Houtz PL, Gläßer C, Revah J, Korzelius J, Patel PH, Edgar BA, Buchon N. Regional Cell-Specific Transcriptome Mapping Reveals Regulatory Complexity in the Adult Drosophila Midgut. Cell Rep. 2015 Jul 14	2015 Jul	http://www.ncbi.nlm.nih.gov/pubmed/26146076
A02	Zhou J, Florescu S, Boettcher AL, Luo L, Dutta D, Kerr G, Cai Y, Edgar BA, Boutros M. Dpp/Gbb signaling is required for normal intestinal regeneration during infection. Dev Biol. 2015 Mar 15	2015 Mar	http://www.ncbi.nlm.nih.gov/pubmed/25553980
A02	Kohlmaier A, Fassnacht CH, Reuter H, Begum J, Jin Y, Dutta D, Edgar BA. Src kinase function controls progenitor cell pools during regeneration and tumor onset in the Drosophila intestine. Oncogene 34:2371-84 PMID: 24975577	2015 Apr	https://www.nature.com/articles/onc2014163
A02	Korzelius J, Naumann SK, Loza-Coll MA, Chan JS, Dutta D, Oberheim J, Gläßer C, Southall TD, Brand AH, Jones DL, Edgar BA. Escargot maintains stemness and suppresses differentiation in Drosophila intestinal stem cells. EMBO J. 2014 Dec	2014 Dec	https://www.ncbi.nlm.nih.gov/pubmed/25298397
A03	Shi D, Tavhelidse T, Thumberger T, Wittbrodt J, Greb T. Bifacial stem cell niches in fish and plants. Curr Opin Genet Dev. 2017 Aug	2017 Aug	https://www.ncbi.nlm.nih.gov/pubmed/28242480
A03	Gutierrez-Triana JA, Mateo JL, Ibberson D, Ryu S,Wittbrodt J. iDamIDseq and iDEAR: an improved method and computational pipeline to profile chromatin-binding proteins. Development. 143, 4272-4278	2016 Nov	https://www.ncbi.nlm.nih.gov/labs/articles/27707796/
A03	Aghaallaei N, Gruhl F, Schaefer CQ, Wernet T, Weinhardt V, Centanin L, Loosli F, Baumbach T, Wittbrodt J. Identification, visualization and clonal analysis of intestinal stem cells in fish. Development.143, 3470-3480	2016 Oct	https://www.ncbi.nlm.nih.gov/pubmed/27578784
A03	Reinhardt R, Centanin L, Tavhelidse T, Inoue D, Wittbrodt B, Concordet JP, Martinez-Morales JR, Wittbrodt J. Sox2, Tlx, Gli3, and Her9 converge on Rx2 to define retinal stem cells in vivo. EMBO J. 2015 Jun 3	2015 Jun	http://www.ncbi.nlm.nih.gov/pubmed/25908840
A03	Stemmer M, Schuhmacher LN, Foulkes NS, Bertolucci C, Wittbrodt J. Cavefish eye loss in response to an early block in retinal differentiation progression. Development. 2015 Feb 15	2015 Feb	http://www.ncbi.nlm.nih.gov/pubmed/25617433
A03	Stemmer M, Thumberger T, Del Sol Keyer M, Wittbrodt J, Mateo JL. CCTop: An Intuitive, Flexible and Reliable CRISPR/Cas9 Target Prediction Tool. PLoS One. 2015 Apr 24	2015 Apr	https://www.ncbi.nlm.nih.gov/pubmed/25909470
A03	Centanin L, Ander JJ, Hoeckendorf B, Lust K, Kellner T, Kraemer I, Urbany C, Hasel E, Harris WA, Simons BD, Wittbrodt J. Exclusive multipotency and preferential asymmetric divisions in post-embryonic neural stem cells of the fish retina. Development. 2014 Sep	2014 Sep	http://www.ncbi.nlm.nih.gov/pubmed/25142461
A03	Sinn R, Peravali R, Heermann S, Wittbrodt J. Differential responsiveness of distinct retinal domains to Atoh7. Mech Dev. 2014 Aug	2014 Aug	http://www.ncbi.nlm.nih.gov/pubmed/25151399
A03	Centanin L, Wittbrodt J. Retinal neurogenesis. Development. 2014 Jan	2014 Jan	https://www.ncbi.nlm.nih.gov/pubmed/24381194
A06	Bahuguna, S., Redhai, S., Zhou, J., Wang, T., Port, F., Boutros, M. (2021). Conditional CRISPR-Cas Genome Editing in Drosophila to Generate Intestinal Tumors.	2021 Nov	https://www.mdpi.com/2073-4409/10/11/3156
A06	Zhou, J., Valentini, E., Boutros, M. (2021). Microenvironmental innate immune signaling and cell mechanical responses promote tumor growth.	2021 Jul	https://pubmed.ncbi.nlm.nih.gov/34197724/
A06	Funk MC, Zhou J, Boutros M. Ageing, metabolism and the intestine.	2020 Jun	https://www.embopress.org/doi/full/10.15252/embr.202050047
A06	Zhou J, Boutros M. JNK-dependent intestinal barrier failure disrupts host-microbe homeostasis during tumorigenesis.	2020 Apr	https://www.pnas.org/doi/10.1073/pnas.1913976117
A06	Tamirisa S, Papagiannouli F, Rempel E, Ermakova O, Trost N, Zhou J, Mundorf J, Brunel S, Ruhland N, Boutros M, Lohmann JU, Lohmann I. Decoding the Regulatory Logic of the Drosophila Male Stem Cell System. Cell Rep. 2018 Sep 11	2018 Sep	https://www.ncbi.nlm.nih.gov/pubmed/30208329
A06	Trost N, Rempel E, Ermakova O, Tamirisa S, Pârcâlâbescu L, Boutros M, Lohmann JU, Lohmann I. WEADE: A workflow for enrichment analysis and data exploration. PLoS One. 2018 Sep 28	2018 Sep	https://www.ncbi.nlm.nih.gov/pubmed/30265728
A06	Augustin I, Dewi DL, Hundshammer J, Erdmann G, Kerr G, Boutros M. Autocrine Wnt regulates the survival and genomic stability of embryonic stem cells. Sci Signal. 2017 Jan	2017 Jan	https://www.ncbi.nlm.nih.gov/pubmed/28074006
A06	Zhou J, Edgar BA and Boutros M. ATF3 acts as a rheostat to control JNK signalling during intestinal regeneration. Nat Commun. 2017	2017 Mar	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5344978/
A06	Augustin I, Dewi DL, Hundshammer J, Erdmann G, Kerr G, Boutros M. Autocrine Wnt regulates the survival and genomic stability of embryonic stem cells. Sci Signal. 2017 Jan 10	2017 Jan	https://www.ncbi.nlm.nih.gov/labs/articles/28074006/
A06	Papagiannouli F, Tamirisa S, Rempel E, Ermakova O, Trost N, Zhou J, Mundorf J, Brunel S, Ruhland N, Boutros M, Lohmann JU, Lohmann I. Decoding the regulatory logic of the Drosophila male stem cell system. BioRxiv doi.org/10.1101/227876	2017 Dec	https://www.biorxiv.org/content/early/2017/12/02/227876
A06	Augustin I, Dewi DL, Hundshammer J, Rempel E, Brunk F, Boutros M. Immune cell recruitment in teratomas is impaired by increased Wnt secretion. Stem Cell Res. 2016 Nov. Doi: 10.1016/j.scr.2016.10.010	2016 Nov	https://www.ncbi.nlm.nih.gov/pubmed/27838585
A06	Scholz B, Korn C, Wojtarowicz J, Mogler C, Augustin I, Boutros M, Niehrs C, Augustin HG. Endothelial RSPO3 controls vascular stability and pruning through non-canonical WNT/Ca2+/NFAT signaling. Dev Cell 36, 79-93. 2016 Jan 11. doi: 10.1016/j.devcel.2015.12.015	2016 Jan	http://www.ncbi.nlm.nih.gov/pubmed/26766444
A06	Brunk F, Augustin I, Meister M, Boutros M, Kyewski B. Thymic Epithelial Cells Are a Nonredundant Source of Wnt Ligands for Thymus Development. J Immunol. 2015 Dec 1	2015 Dec	http://www.ncbi.nlm.nih.gov/pubmed/26512137
A06	Erdmann G, Suchanek M, Horn P, Graf F, Volz C, Horn T, Zhang X, Wagner W, Ho AD, Boutros M. Functional fingerprinting of human mesenchymal stem cells using high-throughput RNAi screening. Genome Med. 2015 May 17	2015 May	http://www.ncbi.nlm.nih.gov/pubmed/26120366
A06	Zhou J, Florescu S, Boettcher A-LL, Luo L, Dutta D, Kerr G, Cai Y, Edgar BA and Boutros M. Dpp/Gbb signaling is required for normal intestinal regeneration during infection. Dev Biol. 2015 Mar 15	2015 Mar	http://www.ncbi.nlm.nih.gov/pubmed/25553980
A11	Stolper J, Ambrosio EM, Danciu DP, Buono L, Elliott DA, Naruse K, Martínez-Morales JR, Marciniak-Czochra A, Centanin L. Stem cell topography splits growth and homeostatic functions in the fish gill. Elife. 2019 May 16	2019 May	https://www.ncbi.nlm.nih.gov/pubmed/31090541
A11	Tsingos E, Höckendorf B, Sütterlin T, Kirchmaier S, Grabe N, Centanin L, Wittbrodt J. Retinal stem cells modulate proliferative parameters to coordinate post-embryonic morphogenesis in the eye of fish. Elife. 2019 Mar 26	2019 Mar	https://www.ncbi.nlm.nih.gov/pubmed/30910010
A11	Seleit A, Krämer I, Riebesehl B, Ambrosio EA, Stolper J, Dross N, Lischik C, Centanin L. Neural stem cells induce the formation of their physical niche during organogenesis. Elife. 2017 Sep	2017 Sep	https://www.ncbi.nlm.nih.gov/pubmed/28950935
A11	Seleit A, Krämer I, Ambrosio E, Dross N, Engel U, Centanin L. Sequential organogenesis sets two parallel sensory lines in medaka. Development 144, 687-697. 2017 Feb15 doi: 10.1242/dev.142752	2017 Feb	https://www.ncbi.nlm.nih.gov/pubmed/28087632
A11	Aghaallaei N, Gruhl F, Schaefer CQ, Wernet T, Weinhardt V, Centanin L, Loosli F, Baumbach T, Wittbrodt J. Identification, visualization and clonal analysis of intestinal stem cells in fish. Development.143, 3470-3480	2016 Oct	https://www.ncbi.nlm.nih.gov/pubmed/27578784
A11	Lust K, Sinn R, Pérez Saturnino A, Centanin L, Wittbrodt J. De novo neurogenesis by targeted expression of atoh7 to Müller glia cells. Development. 2016 Jun	2016 Oct	https://www.ncbi.nlm.nih.gov/pubmed/27068106
A11	Reinhardt R, Centanin L, Tavhelidse T, Inoue D, Wittbrodt B, Concordet JP, Martinez-Morales JR, Wittbrodt J. Sox2, Tlx, Gli3, and Her9 converge on Rx2 to define retinal stem cells in vivo. EMBO J. 2015 Jun 3	2015 Jun	http://www.ncbi.nlm.nih.gov/pubmed/25908840
A11	Centanin L, Ander JJ, Hoeckendorf B, Lust K, Kellner T, Kraemer I, Urbany C, Hasel E, Harris WA, Simons BD, Wittbrodt J. Exclusive multipotency and preferential asymmetric divisions in post-embryonic neural stem cells of the fish retina. Development. 2014 Sep	2014 Sep	http://www.ncbi.nlm.nih.gov/pubmed/25142461
A12	Martins LR, Bung RK, Koch S, Richter K, Schwarzmüller L, Terhardt D, Kurtulmus B, Niehrs C, Rouhi A, Lohmann I, Pereira G, Fröhling S, Glimm H, Scholl C. Stk33 is required for spermatid differentiation and male fertility in mice. Dev Biol. 2018 Jan	2018 Jan	https://www.ncbi.nlm.nih.gov/pubmed/29155043
A12	Raffel S, Falcone M, Kneisel N, Hansson J, Wang W, Lutz C, Bullinger L, Poschet G, Nonnenmacher Y, Barnert A, Bahr C, Zeisberger P, Przybylla A, Sohn M, Tönjes M, Erez A, Adler L, Jensen P, Scholl C, Fröhling S, Cocciardi S, Wuchter P, Thiede C, Flörcken A, Westermann J, Ehninger G, Lichter P, Hiller K, Hell R, Herrmann C, Ho AD, Krijgsveld J, Radlwimmer B, Trumpp A. BCAT1 restricts alphaKG levels resembling IDHmut-driven DNA hypermethylation in AML stem cells. Nature. 2017 Nov	2017 Nov	https://www.ncbi.nlm.nih.gov/pubmed/29144447
A12	Giessler KM, Kleinheinz K, Huebschmann D, Balasubramanian GP, Dubash TD, Dieter SM, Siegl C, Herbst F, Weber S, Hoffmann CM, Fronza R, Buchhalter I, Paramasivam N, Eils R, Schmidt M, von Kalle C, Schneider M, Ulrich A, Scholl C, Fröhling S, Weichert W, Brors B, Schlesner M, Ball CR, Glimm H. Genetic subclone architecture of tumor clone-initiating cells in colorectal cancer. J Exp Med. 2017 Jul 3	2017 Jul	https://www.ncbi.nlm.nih.gov/pubmed/28572216
A12	Ball CR, Oppel F, Ehrenberg KR, Dubash TD, Dieter SM, Hoffmann CM, Abel U, Herbst F, Koch M, Werner J, Bergmann F, Ishaque N, Schmidt M, von Kalle C, Scholl C, Fröhling S, Brors B, Weichert W, Weitz J, Glimm H. Succession of transiently active tumor-initiating cell clones in human pancreatic cancer xenografts. EMBO Mol Med. 2017 Jul	2017 Jul	https://www.ncbi.nlm.nih.gov/pubmed/28526679
A12	Rouhi A, Miller C, Grasedieck S, Reinhart S, Stolze B, Döhner H, Kuchenbauer F, Bullinger L, Fröhling S, Scholl C. Prospective identification of resistance mechanisms to HSP90 inhibition in KRAS mutant cancer cells. Oncotarget. 2017 Jan	2017 Jan	https://www.ncbi.nlm.nih.gov/pubmed/28032595
A12	Uras IZ, Walter GJ, Scheicher R, Bellutti F, Prchal-Murphy M, Tigan AS, Valent P, Heidel FH, Kubicek S, Scholl C, Fröhling S, Sexl V. Palbociclib treatment of FLT3-ITD+ AML cells uncovers a kinase-dependent transcriptional regulation of FLT3 and PIM1 by CDK6. Blood. 2016 Jun 9. doi: 10.1182/blood-2015-11-683581	2016 Jun	http://www.ncbi.nlm.nih.gov/pubmed/27099147
A12	Dubash TD, Hoffmann CM, Oppel F, Giessler KM, Weber S, Dieter SM, Hüllein J, Zenz T, Herbst F, Scholl C, Weichert W, Werft W, Benner A, Schmidt M, Schneider M, Glimm H, Ball CR. Phenotypic differentiation does not affect tumorigenicity of primary human colon cancer initiating cells. Cancer Lett. 2016 Feb 28. 371, 326-33. doi: 10.1016/j.canlet.2015.11.037	2016 Feb	http://www.ncbi.nlm.nih.gov/pubmed/26679053
A12	Stolze B, Reinhart S, Bulllinger L, Fröhling S, Scholl C. Comparative analysis of KRAS codon 12, 13, 18, 61, and 117 mutations using human MCF10A isogenic cell lines. Sci Rep. 2015 Feb	2015 Feb	https://www.ncbi.nlm.nih.gov/pubmed/25705018
A12	Voloshanenko O, Erdmann G, Dubash TD, Augustin I, Metzig M, Moffa G, Hundsrucker C, Kerr G, Sandmann T, Anchang B, Demir K, Boehm C, Leible S, Ball CR, Glimm H, Spang R, Boutros M. Wnt secretion is required to maintain high levels of Wnt activity in colon cancer cells. Nat Commun. 2013	2013 Oct	https://www.ncbi.nlm.nih.gov/pubmed/24162018
A12	Azoitei N, Hoffmann CM, Ellegast JM, Ball CR, Obermayer K, Gößele U, Koch B, Faber K, Genze F, Schrader M, Kestler HA, Döhner H, Chiosis G, Glimm H, Fröhling S, Scholl C. Targeting of KRAS mutant tumors by HSP90 inhibitors involves degradation of STK33. J Exp Med. 2012 Apr	2012 Apr	https://www.ncbi.nlm.nih.gov/pubmed/22451720
A12	Dieter SM, Ball CR, Hoffmann CM, Nowrouzi A, Herbst F, Zavidij O, Abel U, Arens A, Weichert W, Brand K, Koch M, Weitz J, Schmidt M, von Kalle C, Glimm H. Distinct types of tumor-initiating cells form human colon cancer tumors and metastases. Cell Stem Cell. 2011 Oct	2011 Oct	https://www.ncbi.nlm.nih.gov/pubmed/21982235
A13	Wang W, Bochtler T, Wuchter P, Manta L, He H, Eckstein V, Ho AD, Lutz C. Mesenchymal stromal cells contribute to quiescence of therapy resistant leukemic cells in acute myeloid leukemia. Eur J Haematol. 2017 Nov	2017 Nov	https://www.ncbi.nlm.nih.gov/pubmed/28800175
A13	Wang W, Stiehl T, Raffel S, Hoang VT, Hoffmann I, Poisa-Beiro L, Saeed BR, Blume R, Manta L, Eckstein V, Bochtler T, Wuchter P, Essers M, Jauch A, Trumpp A, Marciniak-Czochra A, Ho AD, Lutz C. Reduced hematopoietic stem cells frequency predicts outcome in acute myeloid leukemia. Haematologica. 2017 May. 102, 1567-1577. pii: haematol.2016.163584. doi: 10.3324/haematol.2016.163584	2017 May	https://www.ncbi.nlm.nih.gov/pubmed/28550184
A13	Velten L, Haas SF, Raffel S, Blaszkiewicz S, Islam S, Hennig BP, Hirche C, Lutz C, Buss EC, Nowak D, Boch T, Hofmann WK, Ho AD, Huber W, Trumpp A, Essers MA, Steinmetz LM. Human haematopoietic stem cell lineage commitment is a continuous process. Nat Cell Biol. 2017 Apr. 19: 271-281. doi: 10.1038/ncb3493	2017 Apr	https://www.ncbi.nlm.nih.gov/pubmed/28319093
A13	Wang W, Foerner E, Buss E, Jauch A, Eckstein V, Wuchter P, Ho AD, Lutz C. Hematopoietic stem cells can be separated from leukemic cells in a subgroup of adult acute lymphoblastic leukemia patients. Leuk Lymphoma. 2016 Oct 13:1-9. DOI: 10.1080/10428194.2016.1236378.	2016 Oct	https://www.ncbi.nlm.nih.gov/pubmed/27734718
A13	Stiehl T, Lutz C, Marciniak-Czochra A. Emergence of heterogeneity in acute leukemias. Biol Direct. 2016 Oct. 11, 51. DOI: 10.1186/s13062-016-0154-1	2016 Oct	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5062896/
A13	Hoang VT, Buss EC, Wang W, Hoffmann I, Raffel S, Zepeda-Moreno A, Baran N, Wuchter P, Eckstein V, Trumpp A, Jauch A, Ho AD, Lutz C. The rarity of ALDH(+) cells is the key to separation of normal versus leukemia stem cells by ALDH activity in AML patients. Int J Cancer. 2015 Aug 1	2015 Aug	http://www.ncbi.nlm.nih.gov/pubmed/25545165
A14	Martins LR, Bung RK, Koch S, Richter K, Schwarzmüller L, Terhardt D, Kurtulmus B, Niehrs C, Rouhi A, Lohmann I, Pereira G, Fröhling S, Glimm H, Scholl C. Stk33 is required for spermatid differentiation and male fertility in mice. Dev Biol. 2018 Jan	2018 Jan	https://www.ncbi.nlm.nih.gov/pubmed/29155043
A14	Maekawa H, Neuner A, Rüthnick D, Schiebel E, Pereira G, Kaneko Y. Polo-like kinase Cdc5 regulates Spc72 recruitment to spindle pole body in the methylotrophic yeast Ogataea polymorpha. Elife. 2017 Aug	2017 Aug	https://www.ncbi.nlm.nih.gov/pubmed/28853395
A14	Caydasi AK, Khmelinskii A, Duenas-Sanchez R, Kurtulmus B, Knop M, Pereira G. Temporal and compartment-specific signals coordinate mitotic exit with spindle position. Nat Commun. 2017 Jan. 8, 14129. doi: 10.1038/ncomms14129	2017 Jan	https://www.ncbi.nlm.nih.gov/pubmed/28117323
A14	Kurtulmus B, Yuan C, Schuy J, Neuner A, Hata S, Kalamakis G, Martin-Villalba A, Pereira, G. The leucine-rich repeat protein LRRC45 indicates modular functions of distal appendages in ciliogenesis. BioRxiv, 205625	2017 Oct	https://www.biorxiv.org/content/early/2017/10/20/205625
A14	Kurtulmus B, Wang W, Ruppert T, Neuner A, Cerikan B, Viol L, Dueñas-Sánchez R, Gruss OJ, Pereira G. WDR8 is a centriolar satellite and centriole-associated protein that promotes ciliary vesicle docking during ciliogenesis. J Cell Sci. 2016 Feb 1	2016 Feb	http://www.ncbi.nlm.nih.gov/pubmed/?term=WDR8%20is%20a%20centriolar%20satellite%20and%20centriole-associated%20protein%20that%20promotes%20ciliary%20vesicle%20docking%20during%20ciliogenesis.
A14	Gazea M, Tasouri E, Tolve M, Bosch V, Kabanova A, Gojak C, Kurtulmus B, Novikov O, Spatz J, Pereira G, Hübner W, Brodski C, Tucker KL, Blaess S. Primary cilia are critical for Sonic hedgehog-mediated dopaminergic neurogenesis in the embryonic midbrain. Dev Biol. 2016 Jan 1	2016 Jan	http://www.ncbi.nlm.nih.gov/pubmed/?term=Primary%20cilia%20are%20critical%20for%20Sonic%20hedgehog-mediated%20dopaminergic%20neurogenesis%20in%20the%20embryonic%20midbrain
A14	Klinger M, Wang W, Kuhns S, Barenz F, Drager-Meurer S, Pereira G, Gruss OJ. The novel centriolar satellite protein SSX2IP targets Cep290 to the ciliary transition zone. Mol Biol Cell. 2014 Feb	2014 Feb	https://www.ncbi.nlm.nih.gov/pubmed/24356449
A14	Schmidt KN, Kuhns S, Neuner A, Hub B, Zentgraf H, Pereira G. Cep164 mediates vesicular docking to the mother centriole during early steps of ciliogenesis. J Cell Biol. 2012 Dec	2012 Dec	https://www.ncbi.nlm.nih.gov/pubmed/23253480
A16	Gao R, Liang X, Cheedipudi S, Cordero J, Jiang X, Zhang Q, Caputo L, Günther S, Kuenne C, Ren Y, Bhattacharya S, Yuan X, Barreto G, Chen Y, Braun T, Evans SM, Sun Y, Dobreva G. Pioneering function of Isl1 in the epigenetic control of cardiomyocyte cell fate. Cell Res. 2019 Jun	2019 Jun	https://www.nature.com/articles/s41422-019-0168-1
A16	Yuan X, Qi H, Li X, Wu F, Fang J, Bober E, Dobreva G, Zhou Y, Braun T. Disruption of spatiotemporal hypoxic signaling causes congenital heart disease in mice. J Clin Invest. 2017 Jun	2017 Jun	https://www.ncbi.nlm.nih.gov/pubmed/28436940
A16	Witzel HR, Cheedipudi S, Gao R, Stainier DY, Dobreva G. Isl2b regulates anterior second heart field development in zebrafish. Sci Rep. 2017 Jan	2017 Jan	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5247716/
A16	Caputo L, Witzel HR, Kolovos P, Cheedipudi S, Looso M, Mylona A, van IJcken WF, Laugwitz KL, Evans SM, Braun T, Soler E, Grosveld F, Dobreva G. The Isl1/Ldb1 Complex Orchestrates Genome-wide Chromatin Organization to Instruct Differentiation of Multipotent Cardiac Progenitors. Cell Stem Cell. 2015 Sep	2015 Sep	https://www.ncbi.nlm.nih.gov/pubmed/26321200
A16	Dorn T, Goedel A, Lam JT, Haas J, Tian Q, Herrmann F, Bundschu K, Dobreva G, Schiemann M, Dirschinger R, Yanchun G, Kühl S, Sinnecker D, Lipp P, Laugwitz KL, Kühl M, Moretti A. Direct Nkx2-5 transcriptional repression of Isl1 controls cardiomyocyte subtype identity. Stem Cells. 2015 Apr	2015 Apr	https://www.ncbi.nlm.nih.gov/pubmed/25524439
A16	Cheedipudi S, Genolet O, Dobreva G. Epigenetic inheritance of cell fates during embryonic development.. Front Genet. 2014 Feb	2014 Feb	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3912789/
A16	Ohtani K, Zhao C, Dobreva G, Manavski Y, Kluge B, Braun T, Rieger MA, Zeiher AM, Dimmeler S. Jmjd3 controls mesodermal and cardiovascular differentiation of embryonic stem cells.. Circ Res. 2013 Sep	2013 Sep	https://www.ncbi.nlm.nih.gov/pubmed/23856522
A16	Witzel H, Jungblut B, Choe CP, Crump JG, Braun T, Dobreva G. The LIM protein Ajuba restricts the second heart field progenitor pool by regulating Isl1 activity. Dev Cell. 2012 Jul	2012 Jul	https://www.ncbi.nlm.nih.gov/pubmed/22771034
A16	Kieslinger M, Hiechinger S, Dobreva G, Consalez GG, Grosschedl R. Early B cell factor 2 regulates hematopoietic stem cell homeostasis in a cell-nonautonomous manner. Cell Stem Cell. 2010 Oct	2010 Oct	https://www.ncbi.nlm.nih.gov/pubmed/20887955
A17	Sarropoulos I, Marin R, Cardoso-Moreira M, Kaessmann H. Developmental dynamics of lncRNAs across mammalian organs and species. Nature. 2019 Jun 26. doi: 10.1038/s41586-019-1341-x	2019 Jun	https://www.ncbi.nlm.nih.gov/pubmed/31243368
A17	Cardoso-Moreira M, Halbert J, Valloton D, Velten B, Chen C, Shao Y, Liechti A, Ascenção K, Rummel C, Ovchinnikova S, Mazin PV, Xenarios I, Harshman K, Mort M, Cooper DN, Sandi C, Soares MJ, Ferreira PG, Afonso S, Carneiro M, Turner JMA, VandeBerg JL, Fallahshahroudi A, Jensen P, Behr R, Lisgo S, Lindsay S, Khaitovich P, Huber W, Baker J, Anders S, Zhang YE, Kaessmann H. Gene expression across mammalian organ development. Nature. 2019 Jun 26. doi: 10.1038/s41586-019-1338-5	2019 Jun	https://www.ncbi.nlm.nih.gov/pubmed/31243369
A17	Guschanski K, Warnefors M, Kaessmann H. The evolution of duplicate gene expression in mammalian organs. Genome Res. 2017 Sep	2017 Sep	https://www.ncbi.nlm.nih.gov/pubmed/28743766
A17	Carelli FN, Hayakawa T, Go Y, Imai H, Warnefors M, Kaessmann H. The life history of retrocopies illuminates the evolution of new mammalian genes. Genome Res. 2016 Mar	2016 Mar	https://www.ncbi.nlm.nih.gov/pubmed/26728716
A17	Necsulea A, Kaessmann H. Evolutionary dynamics of coding and noncoding transcriptomes. Nat Rev Genet. 2014 Nov	2014 Nov	https://www.ncbi.nlm.nih.gov/pubmed/25297727
A17	Necsulea A, Soumillon M, Warnefors M, Liechti A, Daish T, Zeller U, Baker JC, Grützner F, Kaessmann H. The evolution of lncRNA repertoires and expression patterns in tetrapods. Nature. 2014 Jan	2014 Jan	https://www.ncbi.nlm.nih.gov/pubmed/24463510
A17	Cortez D, Marin R, Toledo-Flores D, Froidevaux L, Liechti A, Waters PD, Grützner F, Kaessmann H. Origins and functional evolution of Y chromosomes across mammals. Nature. 2014 Apr	2014 Apr	https://www.ncbi.nlm.nih.gov/pubmed/24759410
A17	Soumillon M, Necsulea A, Weier M, Brawand D, Zhang X, Gu H, Barthès P, Kokkinaki M, Nef S, Gnirke A, Dym M, de Massy B, Mikkelsen TS, Kaessmann H. Cellular source and mechanisms of high transcriptome complexity in the mammalian testis. Cell Rep. 2013 Jun	2013 Jun	https://www.ncbi.nlm.nih.gov/pubmed/23791531
A17	Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H. Birth and expression evolution of mammalian microRNA genes. Genome Res. 2013 Jan	2013 Jan	https://www.ncbi.nlm.nih.gov/pubmed/23034410
A17	Julien P, Brawand D, Soumillon M, Necsulea A, Liechti A, Schütz F, Daish T, Grützner F, Kaessmann H. Mechanisms and evolutionary patterns of mammalian and avian dosage compensation. PLoS Biol. 2012 May	2012 May	https://www.ncbi.nlm.nih.gov/pubmed/22615540
A17	Brawand D, Soumillon M, Necsulea A, Julien P, Csárdi G, Harrigan P, Weier M, Liechti A, Aximu-Petri A, Kircher M, Albert FW, Zeller U, Khaitovich P, Grützner F, Bergmann S, Nielsen R, Pääbo S, Kaessmann, H. The evolution of gene expression levels in mammalian organs. Nature. 2011 Oct	2011 Oct	https://www.ncbi.nlm.nih.gov/pubmed/22012392
A17	Kaessmann H. Origins, evolution and phenotypic impact of new genes. Genome Res. 2010 Oct	2010 Oct	https://www.ncbi.nlm.nih.gov/pubmed/20651121
B01	Sloan J, Hakenjos JP, Gebert M, Ermakova O, Gumiero A, Stier G, Wild K, Sinning I & Lohmann J. Structural basis for the complex DNA binding behavior of the plant stem cell regulator WUSCHEL. Nat Commun 11, 2223 (2020). doi:10.1038/s41467-020-16024-y	2020 May	https://www.nature.com/articles/s41467-020-16024-y
B01	Ma Y, Miotk A, ?utikovi? Z, Ermakova O, Wenzl C, Medzihradszky A, Gaillochet C, Forner J, Utan G, Brackmann K, Galván-Ampudia CS, Vernoux T, Greb T, Lohmann J. WUSCHEL acts as an auxin response rheostat to maintain apical stem cells in Arabidopsis. Nat Commun 10, 5093 (2019) doi:10.1038/s41467-019-13074-9	2019 Nov	https://www.nature.com/articles/s41467-019-13074-9
B01	Weits DA, Kunkowska AB, Kamps NCW, Portz KMS, Packbier NK, Nemec Venza Z, Gaillochet C, Lohmann JU, Pedersen O, van Dongen JT, Licausi F. An apical hypoxic niche sets the pace of shoot meristem activity. Nature. 2019 May	2019 May	https://www.ncbi.nlm.nih.gov/pubmed/31092919
B01	Kim JY, Yang W, Forner J, Lohmann JU, Noh B, Noh YS. Epigenetic reprogramming by histone acetyltransferase HAG1/AtGCN5 is required for pluripotency acquisition in Arabidopsis. EMBO J. 2018 Oct 15	2018 Oct	https://www.ncbi.nlm.nih.gov/pubmed/30061313
B01	Brackmann K, Qi J, Gebert M, Jouannet V, Schlamp T, Grünwald K, Wallner ES, Novikova DD, Levitsky VG, Agustí J, Sanchez P, Lohmann JU, Greb T. Spatial specificity of auxin responses coordinates wood formation. Nat Commun. 2018 Feb 28	2018 Feb	https://www.ncbi.nlm.nih.gov/pubmed/29491423
B01	Schuerholz AK, Lopez-Salmeron V, Li Z, Forner J, Wenzl C, Gaillochet C, Augustin S, Vilches Barro A, Fuchs M, Gebert M, Vermeer JEM, Lohmann JU, Greb T, Wolf S. A Comprehensive Tool Set for Inducible, Cell Type-Specific Gene Expression in Arabidopsis. Plant Physiol. 2018 Sep	2018 Sep	https://www.ncbi.nlm.nih.gov/pubmed/30026289
B01	Trost N, Rempel E, Ermakova O, Tamirisa S, Parcalabescu L, Boutros M, Lohmann JU, Lohmann I. WEADE: a workflow for enrichment analysis and data exploration. PLoS One. 2018 Sep 28	2018 Sep	https://www.ncbi.nlm.nih.gov/pubmed/30265728
B01	Tamirisa S, Papagiannouli F, Rempel E, Ermakova O, Trost N, Zhou J, Mundorf J, Brunel S, Ruhland N, Boutros M, Lohmann JU, Lohmann I. Decoding the regulatory logic of the Drosophila male stem cell system. Cell Rep. 2018 Sep 11	2018 Sep	https://www.ncbi.nlm.nih.gov/pubmed/30208329
B01	Gaillochet C, Jamge S, van der Wal F, Angenent G, Immink R, Lohmann JU. A molecular framework for functional versatility of HECATE transcription factors. Plant J. 2018 Jul	2018 Jul	https://www.ncbi.nlm.nih.gov/pubmed/29667268
B01	Gaillochet C, Stiehl T, Wenzl C, Ripoll JJ, Bailey-Steinitz LJ, Pfeiffer A, Miotk A, Hakenjos J, Forner J, Yanofsky MF, Marciniack-Czochra A, Lohmann JU. Control of plant cell fate transitions by transcriptional and hormonal signals. Elife. 2017 Oct	2017 Oct	https://www.ncbi.nlm.nih.gov/pubmed/29058667
B01	Greb T, Lohmann JU. Plant Stem Cells. Curr Biol. 26, R816-R821. 2016 Sep. doi: 10.1016/j.cub.2016.07.070	2016 Sep	https://www.ncbi.nlm.nih.gov/pubmed/27623267
B01	Pfeiffer A, Janocha D, Dong Y, Medzihradszky A, Schöne S, Daum G, Suzaki T, Forner J, Langenecker T, Rempel E, Schmid M, Wirtz M, Hell R, Lohmann JU. Integration of light and metabolic signals for stem cell activation at the shoot apical meristem. Elife. 2016 Jul 11. doi: 10.7554/eLife.17023	2016 Jul	http://www.ncbi.nlm.nih.gov/pubmed/27400267
B01	Schuster C, Gaillochet C, Lohmann JU. Arabidopsis HECATE genes function in phytohormone control during gynoecium development. Development. 2015 Oct	2015 Oct	http://www.ncbi.nlm.nih.gov/pubmed/?term=Arabidopsis%20HECATE%20genes%20function%20in%20phytohormone%20control%20during%20gynoecium%20development
B01	Gaillochet C, Lohmann JU. The never-ending story: from pluripotency to plant developmental plasticity. Development. 2015 Jul	2015 Jul	http://www.ncbi.nlm.nih.gov/pubmed/26130755
B01	Forner J, Pfeiffer A, Langenecker T, Manavella P, Lohmann JU. Germline-transmitted genome editing in Arabidopsis thaliana Using TAL-effector-nucleases. PLoS One. 2015 Mar 30	2015 Mar	http://www.ncbi.nlm.nih.gov/pubmed/25822541
B01	Gaillochet C, Daum G, Lohmann JU. O cell, where art thou? The mechanisms of shoot meristem patterning. Curr Opin Plant Biol. 2015 Feb	2015 Feb	http://www.ncbi.nlm.nih.gov/pubmed/25449732
B01	Yang H, von der Fecht-Bartenbach J, Friml J, Lohmann JU, Neuhäuser B and Ludewig U. Auxin-modulated root growth inhibition in Arabidopsis thaliana seedlings with ammonium as the sole nitrogen source. Functional Plant Biology 42(3) 239-251 DOI: 10.1071/FP14171. Published: 24 October 2014	2014 Oct	http://www.publish.csiro.au/paper/FP14171.htm
B01	Daum G, Medzihradszky A, Suzaki T, Lohmann JU. A mechanistic framework for noncell autonomous stem cell induction in Arabidopsis. Proc Natl Acad Sci U S A. 2014 Oct 7	2014 Oct	http://www.ncbi.nlm.nih.gov/pubmed/25246576
B01	Vilarrasa-Blasi J, González-García MP, Frigola D, Fàbregas N, Alexiou KG, López-Bigas N, Rivas S, Jauneau A, Lohmann JU, Benfey PN, Ibañes M, Caño-Delgado AI. Regulation of plant stem cell quiescence by a brassinosteroid signaling module. Dev Cell. 2014 Jul 14	2014 Jul	http://www.ncbi.nlm.nih.gov/pubmed/24981610
B01	Schuster C, Gaillochet C, Medzihradszky A, Busch W, Daum G, Krebs M, Kehle A, Lohmann JU. A regulatory framework for shoot stem cell control integrating metabolic, transcriptional, and phytohormone signals. Dev Cell. 2014 Feb	2014 Feb	https://www.ncbi.nlm.nih.gov/pubmed/24576426
B01	Lampropoulos A, Sutikovic Z, Wenzl C, Lohmann JU, Forner J. GreenGate - a novel, versatile, and efficient cloning system for plant transgenesis. PLoS One. 2013 Dec	2013 Dec	https://www.ncbi.nlm.nih.gov/pubmed/24376629
B02	Trost N, Rempel E, Ermakova O, Tamirisa S, Parcalabescu L, Boutros M, Lohmann JU, Lohmann I. WEADE: a workflow for enrichment analysis and data exploration. PLoS One. 2018 Sep 28	2018 Sep	https://www.ncbi.nlm.nih.gov/pubmed/30265728
B02	Tamirisa S, Papagiannouli F, Rempel E, Ermakova O, Trost N, Zhou J, Mundorf J, Brunel S, Ruhland N, Boutros M, Lohmann JU, Lohmann I. Decoding the regulatory logic of the Drosophila male stem cell system. Cell Rep. 2018 Sep 11	2018 Sep	https://www.ncbi.nlm.nih.gov/pubmed/30208329
B02	Martins LR, Bung RK, Koch S, Richter K, Schwarzmüller L, Terhardt D, Kurtulmus B, Niehrs C, Rouhi A, Lohmann I, Pereira G, Fröhling S, Glimm H, Scholl C. Stk33 is required for spermatid differentiation and male fertility in mice. Dev Biol. 2018 Jan	2018 Jan	https://www.ncbi.nlm.nih.gov/pubmed/29155043
B02	Domsch K, Papagiannouli F, Lohmann I. The HOX-Apoptosis Regulatory Interplay in Development and Disease. Curr Top Dev Biol. 2015	2015 Oct	https://www.ncbi.nlm.nih.gov/pubmed/26431566
B02	Schardt L, Ander JJ, Lohmann I, Papagiannouli F. Stage-specific control of niche positioning and integrity in the Drosophila testis. Mech Dev. 2015 Nov	2015 Nov	http://www.ncbi.nlm.nih.gov/pubmed/26226434
B02	Papagiannouli F, Lohmann I. Stage-specific control of stem cell niche architecture in the Drosophila testis by the posterior Hox gene Abd-B. Comput Struct Biotechnol J. 2015 Jan	2015 Jan	http://www.ncbi.nlm.nih.gov/pubmed/25750700
B02	Papagiannouli F, Lohmann I. The Male Stem Cell Niche: insights from Drosophila and mammalian model systems, Tissue Specific Stem Cell Niche (Stem Cell Biology and Regenerative Medicine Series), Dr. Kursad Turksen (Ed.). ISSN: 2196-8985, Springer Verlag (accepted	2015	http://www.springer.com/de/book/9783319217048
B02	Papagiannouli F, Schardt L, Grajcarek J, Ha N, Lohmann I. The Hox gene Abd-B controls stem cell niche function in the Drosophila testis. Dev Cell. 2014 Jan	2014 Jan	http://www.ncbi.nlm.nih.gov/pubmed/24480643
B02	Papagiannouli F, Lohmann I. Shaping the niche: lessons from the Drosophila testis and other model systems. Biotechnol J. 2012 Jun. doi: 10.1002/biot.201100352	2012 Jun	http://www.ncbi.nlm.nih.gov/pubmed/22488937
B03	Kirsch N, Chang LS, Koch S, Glinka A, Dolde C, Colozza G, Benitez MDJ, De Robertis EM, Niehrs C. Angiopoietin-like 4 Is a WNT Signaling Antagonist that Promotes LRP6 Turnover. Dev Cell. 2017 Oct	2017 Oct	https://www.ncbi.nlm.nih.gov/pubmed/29017031
B03	Berger BS, Acebron SP, Herbst J, Koch S, Niehrs C. Parkinsons disease-associated receptor GPR37 is an ER chaperone for LRP6. EMBO Rep. 2017 May	2017 May	https://www.ncbi.nlm.nih.gov/pubmed/28341812
B03	Acebron SP, Niehrs C. beta-Catenin-Independent Roles of WNT/LRP6 Signaling. Trends Cell Biol. 2016 Dec	2016 Dec	https://www.ncbi.nlm.nih.gov/pubmed/27568239
B03	Koch S, Acebron SP, Herbst J, Hatiboglu G, Niehrs C. Post-transcriptional WNT Signaling Governs Epididymal Sperm Maturation. Cell. 2015 Nov	2015 Nov	https://www.ncbi.nlm.nih.gov/pubmed/26590424
B03	Huang YL, Anvarian Z, Döderlein G, Acebron SP, Niehrs C. Maternal Wnt/STOP signaling promotes cell division during early Xenopus embryogenesis. Proc Natl Acad Sci U S A. 2015 May 5	2015 May	http://www.ncbi.nlm.nih.gov/pubmed/25901317
B03	Perez-Acebron SP, Karaulanov E, Berger BS, Huang YL, Niehrs C. Mitotic wnt signaling promotes protein stabilization and regulates cell size. Mol Cell. 2014 May	2014 May	https://www.ncbi.nlm.nih.gov/pubmed/24837680
B03	Huang YL, Niehrs C. Polarized WNT Signaling Regulates Ectodermal Cell Fate in Xenopus. Dev Cell. 2014 Apr	2014 Apr	https://www.ncbi.nlm.nih.gov/pubmed/24780739
B03	Arab K, Park YJ, Lindroth AM, Schäfer A, Oakes C, Weichenhan D, Lukanova A, Lundin E, Risch A, Meister M, Dienemann H, Dyckhoff G, Herold-Mende C, Grummt I, Niehrs C, Plass C. Long noncoding RNA TARID directs demethylation and activation of the tumor suppressor TCF21 via GADD45A. Mol Cell. 2014 Aug 21	2014 Aug	http://www.ncbi.nlm.nih.gov/pubmed/25087872
B03	Simonetti M, Agarwal N, Stösser S, Bali KK, Karaulanov E, Kamble R, Pospisilova B, Kurejova M, Birchmeier W, Niehrs C, Heppenstall P, Kuner R. Wnt-Fzd signaling sensitizes peripheral sensory neurons via distinct noncanonical pathways. Neuron. 2014 Jul 2	2014 Jul	http://www.ncbi.nlm.nih.gov/pubmed/24991956
B04	Triana, S., D. Vonficht, L. Jopp-Saile, S. Raffel, R. Lutz, D. Leonce, M. Antes, P. Hernandez-Malmierca, D. Ordonez-Rueda, B. Ramasz, T. Boch, J. C. Jann, D. Nowak, W. K. Hofmann, C. Muller-Tidow, D. Hubschmann, T. Alexandrov, V. Benes, A. Trumpp, M. Paulsen, L. Velten and S. Haas (2021). "Single-cell proteo-genomic reference maps of the hematopoietic system enable the purification and massive profiling of precisely defined cell states."	2021 Dec	https://pubmed.ncbi.nlm.nih.gov/34811546/
B04	Sommerkamp, P., M. C. Romero-Mulero, A. Narr, L. Ladel, L. Hustin, K. Schonberger, S. Renders, S. Altamura, P. Zeisberger, K. Jacklein, D. Klimmeck, A. Rodriguez-Fraticelli, F. D. Camargo, L. Perie, A. Trumpp and N. Cabezas-Wallscheid (2021). "Mouse multipotent progenitor 5 cells are located at the interphase between hematopoietic stem and progenitor cells."	2021 Jun	https://pubmed.ncbi.nlm.nih.gov/33754628/
B04	Sommerkamp, P., S. Altamura, S. Renders, A. Narr, L. Ladel, P. Zeisberger, P. L. Eiben, M. Fawaz, M. A. Rieger, N. Cabezas-Wallscheid and A. Trumpp (2020). "Differential Alternative Polyadenylation Landscapes Mediate Hematopoietic Stem Cell Activation and Regulate Glutamine Metabolism."	2020 May	https://pubmed.ncbi.nlm.nih.gov/32229311/
B04	Saeed, B. R., L. Manta, S. Raffel, P. T. Pyl, E. C. Buss, W. Wang, V. Eckstein, A. Jauch, A. Trumpp, W. Huber, A. D. Ho and C. Lutz (2021). "Analysis of nonleukemic cellular subcompartments reconstructs clonal evolution of acute myeloid leukemia and identifies therapy-resistant preleukemic clones."	2021 Jun	https://pubmed.ncbi.nlm.nih.gov/33411954/
B04	3. Renders, S., A. F. Svendsen, J. Panten, N. Rama, M. Maryanovich, P. Sommerkamp, L. Ladel, A. R. Redavid, B. Gibert, S. Lazare, B. Ducarouge, K. Schonberger, A. Narr, M. Tourbez, B. Dethmers-Ausema, E. Zwart, A. Hotz-Wagenblatt, D. Zhang, C. Korn, P. Zeisberger, A. Przybylla, M. Sohn, S. Mendez-Ferrer, M. Heikenwalder, M. Brune, D. Klimmeck, L. Bystrykh, P. S. Frenette, P. Mehlen, G. de Haan, N. Cabezas-Wallscheid and A. Trumpp (2021). "Niche derived netrin-1 regulates hematopoietic stem cell dormancy via its receptor neogenin-1."	2021 Jan	https://pubmed.ncbi.nlm.nih.gov/33504783/
B04	Raffel, S., D. Klimmeck, M. Falcone, A. Demir, A. Pouya, P. Zeisberger, C. Lutz, M. Tinelli, O. Bischel, L. Bullinger, C. Thiede, A. Florcken, J. Westermann, G. Ehninger, A. D. Ho, C. Muller-Tidow, Z. Gu, C. Herrmann, J. Krijgsveld, A. Trumpp and J. Hansson (2020). "Quantitative proteomics reveals specific metabolic features of acute myeloid leukemia stem cells."	2020 Sep	https://ashpublications.org/blood/article/136/13/1507/461031/Quantitative-proteomics-reveals-specific-metabolic
B04	Baccin, C., J. Al-Sabah, L. Velten, P. M. Helbling, F. Grunschlager, P. Hernandez-Malmierca, C. Nombela-Arrieta, L. M. Steinmetz, A. Trumpp and S. Haas (2020). "Combined single-cell and spatial transcriptomics reveal the molecular, cellular and spatial bone marrow niche organization."	2020 Jan	https://pubmed.ncbi.nlm.nih.gov/31871321/
B04	Paczulla AM, Rothfelder K, Raffel S, Konantz M, Steinbacher J, Wang H, Tandler C, Mbarga M, Schaefer T, Falcone M, Nievergall E, Dörfel D, Hanns P, Passweg JR, Lutz C, Schwaller J, Zeiser R, Blazar BR, Caligiuri MA, Dirnhofer S, Lundberg P, Kanz L, Quintanilla-Martinez L, Steinle A, Trumpp A, Salih HR, Lengerke C. Absence of NKG2D ligands defines leukaemia stem cells and mediates their immune evasion. Nature. 2019 Jul 17. doi: 10.1038/s41586-019-1410-1	2019 Jul	https://www.ncbi.nlm.nih.gov/pubmed/31316209
B04	Eich M, Trumpp A, Schmitt S. OMIP-059: Identification of Mouse Hematopoietic Stem and Progenitor Cells with Simultaneous Detection of CD45.1/2 and Controllable Green Fluorescent Protein Expression by a Single Staining Panel. Cytometry A. 2019 Jul 7. doi: 10.1002/cyto.a.23845	2019 Jul	https://www.ncbi.nlm.nih.gov/pubmed/31282128
B04	Sommerkamp P, Renders S, Ladel L, Hotz-Wagenblatt A, Schönberger K, Zeisberger P, Przybylla A, Sohn M, Zhou Y, Klibanski A, Cabezas-Wallscheid N, Trumpp A. The long non-coding RNA Meg3 is dispensable for hematopoietic stem cells. Scientific Reports, 9(1), 2110. doi: 10.1038/s41598-019-38605-8 @: Shared corresponding author	2019 Feb	https://www.nature.com/articles/s41598-019-38605-8
B04	Karpova D, Rettig MP, Ritchey J, Cancilla D, Christ S, Gehrs L, Chendamarai E, Evbuomwan MO, Holt M, Zhang J, Abou-Ezzi G, Celik H, Wiercinska E, Yang W, Gao F, Eissenberg LG, Heier RF, Arnett SD, Meyers MJ, Prinsen MJ, Griggs DW, Trumpp A, Ruminski PG, Morrow DM, Bonig HB, Link DC, DiPersio JF. Targeting VLA4 integrin and CXCR2 mobilizes serially repopulating hematopoietic stem cells. J Clin Invest. 2019 May 14	2019 May	https://www.ncbi.nlm.nih.gov/pubmed/31085833
B04	Zviran A, Mor N, Rais Y, Gingold H, Peles S, Chomsky E, Viukov S, Buenrostro JD, Scognamiglio R, Weinberger L, Manor YS, Krupalnik V, Zerbib M, Hezroni H, Jaitin DA, Larastiaso D, Gilad S, Benjamin S, Gafni O, Mousa A, Ayyash M, Sheban D, Bayerl J, Aguilera-Castrejon A, Massarwa R, Maza I, Hanna S, Stelzer Y, Ulitsky I, Greenleaf WJ, Tanay A, Trumpp A, Amit I, Pilpel Y, Novershtern N, Hanna JH. Deterministic Somatic Cell Reprogramming Involves Continuous Transcriptional Changes Governed by Myc and Epigenetic-Driven Modules. Cell Stem Cell. 2019 Jan 3	2019 Jan	https://www.ncbi.nlm.nih.gov/pubmed/30554962
B04	Thier MC, Hommerding O, Panten J, Pinna R, García-González D, Berger T, Wörsdörfer P, Assenov Y, Scognamiglio R, Przybylla A, Kaschutnig P, Becker L, Milsom MD, Jauch A, Utikal J, Herrmann C, Monyer H, Edenhofer F, Trumpp A. Identification of Embryonic Neural Plate Border Stem Cells and Their Generation by Direct Reprogramming from Adult Human Blood Cells. Cell Stem Cell. 2019 Jan 3	2019 Jan	https://www.ncbi.nlm.nih.gov/pubmed/30581079
B04	Giladi A, Paul F, Herzog Y, Lubling Y, Weiner A, Yofe I, Jaitin D, Cabezas-Wallscheid N, Dress R, Ginhoux F, Trumpp A, Tanay A, Amit I. Single-cell characterization of haematopoietic progenitors and their trajectories in homeostasis and perturbed haematopoiesis. Nat Cell Biol. 2018 Jul. 20(7):836-846. doi: 10.1038/s41556-018-0121-4	2018 Jul	https://www.ncbi.nlm.nih.gov/pubmed/29915358
B04	Haas S, Trumpp A, Milsom MD. Causes and Consequences of Hematopoietic Stem Cell Heterogeneity. Cell Stem Cell. 2018 May 3	2018 May	https://www.ncbi.nlm.nih.gov/pubmed/29727678
B04	Haas S, Trumpp A. An Intrinsic Interferon Program Protects Stem Cells from Viral Infection. Dev Cell. 2018 Feb	2018 Feb	https://www.ncbi.nlm.nih.gov/pubmed/29408233
B04	Blume R, Rempel E, Manta L, Saeed BR, Wang W, Raffel S, Ermakova O, Eckstein V, Benes V, Trumpp A, Ho AD, Lutz C. The molecular signature of AML with increased ALDH activity suggests a stem cell origin. Leuk Lymphoma. 2018 Jan 16:1-10. doi: 10.1080/10428194.2017.1422862	2018 Jan	https://www.ncbi.nlm.nih.gov/m/pubmed/29334844/
B04	Milanovic M, Fan DNY, Belenki D, Däbritz JHM, Zhao Z, Yu Y, Dörr JR, Dimitrova L, Lenze D, Monteiro Barbosa IA, Mendoza-Parra MA, Kanashova T, Metzner M, Pardon K, Reimann M, Trumpp A, Dörken B, Zuber J, Gronemeyer H, Hummel M, Dittmar G, Lee S, Schmitt CA. Senescence-associated reprogramming promotes cancer stemness. Nature. 2018 Jan	2018 Jan	https://www.ncbi.nlm.nih.gov/pubmed/29258294
B04	Bahr C, Paleske Lv, Uslu VV, Remeseiro S, Takayama N, Ng SW, Murison A, Langenfeld K, Petretich M, Scognamiglio R, Zeisberger P, Benk A, Amit I, Zandstra PW, Lupien M, Dick JE, Trumpp A, Spitz F. A Myc enhancer cluster regulates normal and leukaemic haematopoietic stem cell hierarchies. Nature 2018 Jan	2018 Jan	https://www.nature.com/articles/nature25193
B04	Raffel S, Falcone M, Kneisel N, Hansson J, Wang W Lutz C, Bullinger L, Poschet G, Nonnenmacher Y, Barnert A, Bahr C, Zeisberger P, Przybylla A, Sohn M, Tönjes M, Erez A, Adler L, Jensen P, Scholl C, Fröhling S, Cocciardi S, Wuchter P, Thiede C, Flörcken A, Westermann J, Ehninger G, Lichter P, Hiller K, Hell R, Herrmann C, Ho AD, Krijgsveld J, Radlwimmer B, Trumpp A. BCAT1 restricts alphaKG levels in AML stem cells leading to IDHmut-like DNA hypermethylation. Nature. 2017 Nov	2017 Nov	https://www.ncbi.nlm.nih.gov/pubmed/29144447
B04	Cabezas-Wallscheid N, Buettner F, Sommerkamp P, Klimmeck D, Ladel L, Thalheimer FB, Pastor-Flores D, Roma LP, Renders S, Zeisberger P, Przybylla A, Schönberger K, Scognamiglio R, Altamura S, Florian CM, Fawaz M, Vonficht D, Tesio M, Collier P, Pavlinic D, Geiger H, Schroeder T, Benes V, Dick TP, Rieger MA, Stegle O, Trumpp A. Vitamin A-Retinoic Acid Signaling Regulates Hematopoietic Stem Cell Dormancy. Cell. 2017 May 18	2017 May	https://www.ncbi.nlm.nih.gov/pubmed/28479188
B04	Velten L, Haas SF, Raffel S, Blaszkiewicz S, Islam S, Hennig BP, Hirche C, Lutz C, Buss EC, Nowak D, Boch T, Hofmann WK, Ho AD, Huber W, Trumpp A, Essers MA, Steinmetz LM. Human haematopoietic stem cell lineage commitment is a continuous process. Nat Cell Biol. 2017 Apr. 19	2017 Apr	https://www.ncbi.nlm.nih.gov/pubmed/28319093
B04	Sommerkamp P. and Trumpp A. Metabolic cues for hematopoietic stem cells. Science 02 Dec 2016: Vol. 354, Issue 6316, pp. 1103-1104, DOI: 10.1126/science.aal3466	2016 Dec	http://science.sciencemag.org/content/354/6316/1103
B04	Kanatsu-Shinohara M, Tanaka T, Ogonuki N, Ogura A, Morimoto H, Cheng PF, Eisenmann RN, Trumpp A, Shinohara T. Myc/Mycn-mediated glycolysis enhances mouse spermatogonial stem cell self-renewal. Genes Dev. 2016 Dec 1. doi: 10.1101/gad.287045.116	2016 Dec	https://www.ncbi.nlm.nih.gov/pubmed/28007786
B04	Mossner M, Jann JC, Wittig J, Nolte F, Fey S, Nowak V, Obländer J, Pressler J, Palme I, Xanthopoulos C, Boch T, Metzgeroth G, Röhl H, Witt SH, Dukal H, Klein C, Schmitt S, Gelß P, Platzbecker U, Balaian E, Fabarius A, Blum H, Schulze TJ, Meggendorfer M, Haferlach C, Trumpp A, Hofmann WK, Medyouf H, Nowak D. Mutational hierarchies in myelodysplastic syndromes dynamically adapt and evolve upon therapy response and failure. Blood. 2016 Sep 1	2016 Sep	https://www.ncbi.nlm.nih.gov/pubmed/27268087
B04	Scognamiglio R, Cabezas-Wallscheid N, Thier MC, Altamura S, Reyes A, Prendergast áM, Baumgärtner D, Carnevalli LS, Atzberger A, Haas S, von Paleske L, Boroviak T, Wörsdörfer P, Essers MA, Kloz U, Eisenman RN, Edenhofer F, Bertone P, Huber W, van der Hoeven F, Smith A, Trumpp A. Myc Depletion Induces a Pluripotent Dormant State Mimicking Diapause. Cell. 2016 Feb 11	2016 Feb	http://www.ncbi.nlm.nih.gov/pubmed/?term=Myc%20Depletion%20Induces%20a%20Pluripotent%20Dormant%20State%20Mimicking%20Diapause.
B04	Alexandrova S, Kalkan T, Humphreys P, Riddell A, Scognamiglio R, Trumpp A, Nichols J. Selection and dynamics of embryonic stem cell integration into early mouse embryos. Development. 2016 Jan 1	2016 Jan	http://www.ncbi.nlm.nih.gov/pubmed/?term=Selection%20and%20dynamics%20of%20embryonic%20stem%20cell%20integration%20into%20early%20mouse%20embryos.
B04	Morrison G, Scognamiglio R, Trumpp A, Smith A. Convergence of cMyc and beta-catenin on Tcf7l1 enables endoderm specification. EMBO J. 2016 Jan 1	2016 Jan	http://www.ncbi.nlm.nih.gov/pubmed/?term=Convergence%20of%20cMyc%20and%20%CE%B2-catenin%20on%20Tcf7l1%20enables%20endoderm%20specification
B04	Paul F, Arkin Y, Giladi A, Jaitin DA, Kenigsberg E, Keren-Shaul H, Winter D, Lara-Astiaso D, Gury M, Weiner A, David E, Cohen N, Lauridsen FK, Haas S, Schlitzer A, Mildner A, Ginhoux F, Jung S, Trumpp A, Porse BT, Tanay A, Amit I. Transcriptional Heterogeneity and Lineage Commitment in Myeloid Progenitors. Cell. 2015 Dec 17	2015 Dec	http://www.ncbi.nlm.nih.gov/pubmed/26627738
B04	Stockklausner C, Raffel S, Klermund J, Bandapalli OR, Beier F, Brümmendorf TH, Bürger F, Sauer SW, Hoffmann GF, Lorenz H, Tagliaferri L, Nowak D, Hofmann WK, Buergermeister R, Kerber C, Rausch T, Korbel JO, Luke B, Trumpp A, Kulozik AE. A novel autosomal recessive TERT T1129P mutation in a dyskeratosis congenita family leads to cellular senescence and loss of CD34+ hematopoietic stem cells not reversible by mTOR-inhibition. Aging (Albany NY). 2015 Nov	2015 Nov	http://www.ncbi.nlm.nih.gov/pubmed/?term=A%20novel%20autosomal%20recessive%20TERT%20T1129P%20mutation%20in%20a%20dyskeratosis%20congenita%20family%20leads%20to%20cellular%20senescence%20and%20loss%20of%20CD34%2B%20hematopoietic%20stem%20cells%20not%20reversible%20by%20mTOR-inhibition.
B04	Haas S, Hansson J, Klimmeck D, Loeffler D, Velten L, Uckelmann H, Wurzer S, Prendergast áM, Schnell A, Hexel K, Santarella-Mellwig R, Blaszkiewicz S, Kuck A, Geiger H, Milsom MD, Steinmetz LM, Schroeder T, Trumpp A, Krijgsveld J, Essers MA. Inflammation-Induced Emergency Megakaryopoiesis Driven by Hematopoietic Stem Cell-like Megakaryocyte Progenitors. Cell Stem Cell. 2015 Oct 1	2015 Oct	http://www.ncbi.nlm.nih.gov/pubmed/?term=Inflammation-Induced%20Emergency%20Megakaryopoiesis%20Driven%20by%20Hematopoietic%20Stem%20Cell-like%20Megakaryocyte%20Progenitors
B04	Hoang VT, Buss EC, Wang W, Hoffmann I, Raffel S, Zepeda-Moreno A, Baran N, Wuchter P, Eckstein V, Trumpp A, Jauch A, Ho AD, Lutz C. The rarity of ALDH(+) cells is the key to separation of normal versus leukemia stem cells by ALDH activity in AML patients. Int J Cancer. 2015 Aug 1	2015 Aug	http://www.ncbi.nlm.nih.gov/pubmed/25545165
B04	Walter D, Lier A, Geiselhart A, Thalheimer FB, Huntscha S, Sobotta MC, Moehrle B, Brocks D, Bayindir I, Kaschutnig P, Muedder K, Klein C, Jauch A, Schroeder T, Geiger H, Dick TP, Holland-Letz T, Schmezer P, Lane SW, Rieger MA, Essers MAG, Williams DA, Trumpp A and Milsom MD. Exit from dormancy provokes DNA-damage-induced attrition in haematopoietic stem cells. Nature. 2015 Apr 23	2015 Apr	https://www.ncbi.nlm.nih.gov/pubmed/25707806
B04	Höfner T, Eisen C, Klein C, Rigo-Watermeier T, Goeppinger SM, Jauch A, Schoell B, Vogel V, Noll E,Weichert W,Baccelli I, Schillert A, Wagner S, Pahernik S, Sprick MR and Trumpp A. Defined Conditions for the Isolation and Expansion of Basal Prostate Progenitor Cells of Mouse and Human Origin. Stem Cell Reports. 2015 Mar 10	2015 Mar	http://www.ncbi.nlm.nih.gov/pubmed/25702639
B04	Tesio M, Tang Y, Mudder K, Saini M, von Paleske L, Macintyre E, Pasparakis M, Waisman A, Trumpp, A. Hematopoietic stem cell quiescence and function are controlled by the CYLD-TRAF2-p38MAPK pathway. J Exp Med. 2015 Apr	2015 Apr	https://www.ncbi.nlm.nih.gov/pubmed/25824820
B04	Cabezas-Wallscheid N, Klimmeck D, Hansson J, Lipka DB, Reyes A, Wang Q, Weichenhan D, Lier A, von Paleske L, Renders S, Wünsche P, Brocks D, Gu L, Herrmann C, Haas S, Essers M, Brors B, Eils R, Huber W, Milsom MD, Plass C, Krijgsveld J, Trumpp A. Identification of regulatory networks in HSCs and their immediate progeny via integrated proteome, transcriptome and DNA methylome analysis. Cell Stem Cell. 2014 Oct	2014 Oct	https://www.ncbi.nlm.nih.gov/pubmed/25158935
B04	Lipka DB, Wang Q, Cabezas-Wallscheid N, Klimmeck D, Weichenhan D, Herrmann C, Lier A, Brocks D, von Paleske L, Renders S, Wunsche P, Zeisberger P, Gu L, Haas S, Essers MA, Brors B, Eils R, Trumpp A, Milsom MD, Plass C. Identification of DNA methylation changes at cis-regulatory elements during early steps of HSC differentiation using tagmentation-based whole genome bisulfite sequencing. Cell Cycle. 2014	2014 Oct	https://www.ncbi.nlm.nih.gov/pubmed/25483069
B04	Klimmeck D, Cabezas-Wallscheid N, Reyes A, von Paleske L, Renders S, Hansson J, Krijgsveld J, Huber W, Trumpp A. Transcriptome-wide profiling and posttranscriptional analysis of hematopoietic stem/progenitor cell differentiation toward myeloid commitment. Stem Cell Reports. 2014 Nov	2014 Nov	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4235149/
B04	Medyouf H, Mossner M, Jann JC, Nolte F, Raffel S, Herrmann C, Lier A, Eisen C, Nowak V, Zens B, Müdder K, Klein C, Obländer J, Fey, S, Vogler J, Fabarius A, Riedl E, Roehl H, Kohlmann A, Staller M, Haferlach C, Müller N, John T, Platzbecker U, Metzgeroth G, Hofmann WK, Trumpp A, Nowak D. Myelodysplastic cells in patients re-program mesenchymal stromal cells to establish a transplantable stem cell-niche disease unit. Cell Stem Cell. 2014 Jun	2014 Jun	https://www.ncbi.nlm.nih.gov/pubmed/24704494
B06	Augustin HG, Koh GY. Organotypic vasculature: From descriptive heterogeneity to functional pathophysiology. Science. 2017 Aug 3. pii: eaal2379. doi: 10.1126/science.aal2379	2017 Aug	https://www.ncbi.nlm.nih.gov/pubmed/28775214
B06	Teichert M, Milde L, Holm A, Stanicek L, Gengenbacher N, Savant S, Ruckdeschel T, Hasanov Z, Srivastava K, Hu J, Hertel S, Bartol A, Schlereth K, Augustin HG. Pericyte-expressed Tie2 controls angiogenesis and vessel maturation. Nat Commun. 2017 Jul 18	2017 Jul	https://www.ncbi.nlm.nih.gov/pubmed/28719590
B06	Mogler C, König C, Wieland M, Runge A, Besemfelder E, Komljenovic D, Longerich T, Schirmacher P, Augustin HG. Hepatic stellate cells limit hepatocellular carcinoma progression through the orphan receptor endosialin. EMBO Mol Med. 2017 Jun	2017 Jun	https://www.ncbi.nlm.nih.gov/pubmed/28373218
B06	Hasanov Z, Ruckdeschel T, König C, Mogler C, Kapel SS, Korn C, Spegg C, Eichwald V, Wieland M, Appak S, Augustin HG. Endosialin Promotes Atherosclerosis Through Phenotypic Remodeling of Vascular Smooth Muscle Cells. Arterioscler Thromb Vasc Biol. 2017 Mar	2017 Mar	https://www.ncbi.nlm.nih.gov/pubmed/28126825
B06	Roth L, Prahst C, Ruckdeschel T, Savant S, Weström S, Fantin A, Riedel M, Héroult M, Ruhrberg C, Augustin HG. Neuropilin-1 mediates vascular permeability independently of vascular endothelial growth factor receptor-2 activation. Sci Signal. 2016 Apr	2016 Apr	http://www.ncbi.nlm.nih.gov/pubmed/27117252
B06	Scholz B, Korn C, Wojtarowicz J, Mogler C, Augustin I, Boutros M, Niehrs C, Augustin HG. Endothelial RSPO3 controls vascular stability and pruning through non-canonical WNT/Ca2+/NFAT signaling. Dev Cell. 2016 Jan 11	2016 Jan	http://www.ncbi.nlm.nih.gov/pubmed/?term=Endothelial%20RSPO3%20controls%20vascular%20stability%20and%20pruning%20through%20non-canonical%20WNT/Ca2%2B/NFAT%20signaling.
B06	Savant S, La Porta S, Budnik A, Busch K, Hu J, Tisch N, Korn C, Freire Valls A, Benest AV, Terhardt D, Qu X, Adams RH, Baldwin HS, Ruiz de Almodóvar C, Rodewald HR, Augustin HG. The Orphan Receptor Tie1 Controls Angiogenesis and Vascular Remodeling by Differentially Regulating Tie2 in Tip and Stalk Cells . Cell Rep. 2015 Sep 22	2015 Sep	http://www.ncbi.nlm.nih.gov/pubmed/26344773
B06	Korn C, Augustin HG. Mechanisms of Vessel Pruning and Regression. Dev Cell. 2015 Jul 6	2015 Jul	http://www.ncbi.nlm.nih.gov/pubmed/26151903
B06	Mogler C, Wieland M, König C, Hu J, Runge A, Korn C, Besemfelder E, Breitkopf-Heinlein K, Komljenovic D, Dooley S, Schirmacher P, Longerich T, Augustin HG. Hepatic stellate cell-expressed Endosialin balances fibrogenesis and hepatocyte proliferation during liver damage. EMBO Mol Med. 2015 Mar	2015 Mar	https://www.ncbi.nlm.nih.gov/pubmed/25680861
B06	Hu J, Srivastava K, Wieland M, Runge A, Mogler C, Besemfelder E, Terhardt D, Vogel MJ, Cao L, Korn C, Bartels S, Thomas M, Augustin HG. Endothelial cell-derived Angiopoietin-2 controls liver regeneration as a spatiotemporal rheostat. Science. 2014 Jan	2014 Jan	https://www.ncbi.nlm.nih.gov/pubmed/24458641
B06	Korn C, Scholz B, Srivastava K, Wojtarowicz J, Arnsperger T, Adams RH, Boutros M, Augustin HG, Augustin I. Endothelial cell-derived non-canonical Wnt ligands control vascular pruning in angiogenesis. Development. 2014 Apr	2014 Apr	https://www.ncbi.nlm.nih.gov/pubmed/24715464
B06	Srivastava K, Ju J, Korn C, Savant S, Teichert M, Kapel SS, Jugold M, Besemfelder E, Thomas M, Pasparakis M, Augustin HG. Postsurgical adjuvant tumor therapy by combining anti-Angiopoietin-2 and metronomic chemotherapy limits metastatic growth. Cancer Cell. 2014 Dec	2014 Dec	https://www.ncbi.nlm.nih.gov/pubmed/25490450
B07	Erich Sackmann and Motomu Tanaka. Critical role of lipid membranes in polarization and migration of cells: a biophysical view.	2021 Jan	https://link.springer.com/article/10.1007/s12551-021-00781-1
B07	Motomu Tanaka, Masaki Nakahata, Philipp Linke, Stefan Kaufmann. Stimuli-responsive hydrogels as a model of the dynamic cellular microenvironment.	2020 May	https://www.nature.com/articles/s41428-020-0353-6
B07	Mariam Veschgini, Hendrik O. Petersen, Wasim Abuillan, Fernanda F. Rossetti, Suat ?zbek Manfred Burghammer, Thomas W Holstein* and Motomu Tanaka*. Wnt/_-Catenin Signaling Controls Spatio-Temporal Elasticity Patterns in Extracellular Matrix during Hydra Morphogenesis.	2020	https://www.biorxiv.org/content/10.1101/214718v3
B07	Laura Poisa_Beiro, Judith Thoma, Jonathan Landry, Sven Sauer, Akihisa Yamamoto, Volker Eckstein, Natalie Romanov, Simon Raffel, Georg F. Hoffmann, Peer Bork, Vladimir Benes, Anne_Claude Gavin, Motomu Tanaka* and Anthony D. Ho. Glycogen accumulation, central carbon metabolism, and aging of hematopoietic stem and progenitor cells	2020 July	https://www.nature.com/articles/s41598-020-68396-2
B07	Tanaka, M. In Vitro Dynamic Phenotyping for Testing Novel Mobilizing Agents. in: Klein G., Wuchter P. (eds) Stem Cell Mobilization. Methods in Molecular Biology, vol 2017. Humana, New York, NY	2017	https://doi.org/10.1007/978-1-4939-9574-5_2
B07	G?lce S. G?lc?ler Balta, Cornelia Monzel, Susanne Kleber, Joel Beaudouin, Emre Balta, Thomas Kaindl, Si Chen, Liang Gao, Meinolf Thiemann, Christian R. Wirtz, Yvonne Samstag, Motomu Tanaka and Ana Martin-Villalba.(2019) 3D Cellular Architecture Modulates Tyrosine Kinase Activity, Thereby Switching CD95-Mediated Apoptosis to Survival.	2019 Nov	https://www.sciencedirect.com/science/article/pii/S2211124719313683
B07	Linke P, Suzuki R, Yamamoto A, Nakahata M, Kengaku M, Fujiwara T, Ohzono T, Tanaka M. Dynamic Contact Guidance of Myoblasts by Feature Size and Reversible Switching of Substrate Topography: Orchestration of Cell Shape, Orientation, and Nematic Ordering of Actin Cytoskeletons. Langmuir. 2018 Nov 8. doi: 10.1021/acs.langmuir.8b02972	2018 Nov	https://www.ncbi.nlm.nih.gov/pubmed/30376342
B07	Yu L, Li J, Hong J, Takashima Y, Fujimoto N, Nakajima M, Yamamoto A, Dong X, Dang Y, Hou Y, Yang W, Minami I, Okita K, Tanaka M, Luo C, Tang F, Chen Y, Tang C, Kotera H, Liu L. Low Cell-Matrix Adhesion Reveals Two Subtypes of Human Pluripotent Stem Cells. Stem Cell Reports. 2018 Jul 10	2018 Jul	https://www.ncbi.nlm.nih.gov/pubmed/30008324
B07	Ohta T, Monzel C, Becker A, Ho AD, Tanaka M. Simple Physical Model Unravels Influences of Chemokine on Shape Deformation and Migration of Human Hematopoietic Stem Cells. Sci Rep. 2018 Jul 13	2018 Jul	https://www.ncbi.nlm.nih.gov/pubmed/30006633
B07	Monzel C, Becker AS, Saffrich R, Wuchter P, Eckstein V, Ho AD, Tanaka M. Dynamic cellular phynotyping defines specific mobilization mechanisms of human hematopoietic stem and progenitor cells induced by SDF1alpha versus synthetic agents. Sci Rep. 2018 Jan	2018 Jan	https://www.ncbi.nlm.nih.gov/pubmed/29382856
B07	Dietrich S, Oles M, Sellner L, Anders S, Lu J, Velten B, Mock A, Oakes C, Sutton L, Young E, Rosenquist R, Rossi D, Zirlik K, Herling M, Nguyen-Khac F, Plass C, von Kalle C, Dürig J, Ringshausen I, Huber W, Zenz T. Drug Perturbation Based Stratification of Blood Cancer. J Clin Invest. 2018 Jan	2018 Jan	https://www.ncbi.nlm.nih.gov/pubmed/29227286
B07	Raffel S, Falcone M, Kneisel N, Hansson J, Wang W, Lutz C, Bullinger L, Poschet G, Nonnenmacher Y, Barnert A, Bahr C, Zeisberger P, Przybylla A, Sohn M, Tönjes M, Erez A, Adler L, Jensen P, Scholl C, Fröhling S, Cocciardi S, Wuchter P, Thiede C, Flörcken A, Westermann J, Ehninger G, Lichter P, Hiller K, Hell R, Herrmann C, Ho AD, Krijgsveld J, Radlwimmer B, Trumpp A. BCAT1 restricts alphaKG levels resembling IDHmut-driven DNA hypermethylation in AML stem cells. Nature. 2017 Nov	2017 Nov	https://www.ncbi.nlm.nih.gov/pubmed/29144447
B07	Wang W, Stiehl T, Raffel S, Hoang VT, Hoffmann I, Poisa-Beiro L, Saeed BR, Blume R, Manta L, Eckstein V, Bochtler T, Wuchter P, Essers M, Jauch A, Trumpp A, Marciniak-Czochra A, Ho AD, Lutz C. Reduced hematopoietic stem cells frequency predicts outcome in acute myeloid leukemia. Haematologica. 2017 May. 102, 1567-1577. pii: haematol.2016.163584. doi: 10.3324/haematol.2016.163584	2017 May	https://www.ncbi.nlm.nih.gov/pubmed/28550184
B07	Wang W, Bochtler T, Wuchter P, Manta L, He H, Eckstein V, Ho AD, Lutz C. Mesenchymal stromal cells contribute to quiescence of therapy resistant leukemic cells in acute myeloid leukemia. Eur J Haematol. 2017 Nov	2017 Nov	https://www.ncbi.nlm.nih.gov/pubmed/28800175
B07	Hörnig M, Nakahata M, Linke P, Yamamoto A, Veschgini M, Kaufmann S, Takashima Y, Harada A, and Tanaka M. Dynamic Mechano-Regulation of Myoblast Cells on Supramolecular Hydrogels Cross-Linked by Reversible Host-Guest Interactions. Sci Rep. 2017 Aug 9	2017 Aug	https://www.ncbi.nlm.nih.gov/pubmed/28794475
B07	Shatirishvili M, Burk AS, Franz CM, Pace G, Kastilan T, Breuhahn K, Hinterseer E, Dierich A, Bakiri L, Wagner EF, Ponta H, Hartmann TN, Tanaka M, Orian-Rousseau V. Epidermal-specific deletion of CD44 reveals a function in keratinocytes in response to mechanical stress. Cell Death Dis. 2016 Nov 10. doi: 10.1038/cddis.2016.342	2016 Nov	https://www.ncbi.nlm.nih.gov/pubmed/27831556
B07	Wuchter P, Vetter M, Saffrich R, Diehlmann A, Bieback K, Ho AD, Horn P. Evaluation of GMP-compliant culture media for in vitro expansion of human bone marrow mesenchymal stromal cells. Exp Hematol. 2016 Jun doi: 10.1016/j.exphem.2016.02.004	2016 Jun	http://www.ncbi.nlm.nih.gov/pubmed/?term=Evaluation%20of%20GMP-compliant%20culture%20media%20for%20in%20vitro%20expansion%20of%20human%20bone%20marrow%20mesenchymal%20stromal%20cells
B07	Frank V, Kaufmann S, Wright R, Horn P, Yoshikawa HY, Wuchter P, Madsen J, Lewis AL, Armes SP, Ho AD, Tanaka M. Frequent mechanical stress suppresses proliferation of mesenchymal stem cells from human bone marrow without loss of multipotency. Sci Rep. 2016 Apr 15	2016 Apr	http://www.ncbi.nlm.nih.gov/pubmed/?term=Frequent%20mechanical%20stress%20suppresses%20proliferation%20of%20mesenchymal%20stem%20cells%20from%20human%20bone%20marrow%20without%20loss%20of%20multipotency
B07	Veschgini M, Gebert F, Khangai N, Ito H, Suzuki R, Holstein TW, Mae Y, Arai T, Tanaka M. Tracking mechanical and morphological dynamics of regenerating Hydra tissue fragments using a two fingered micro-robotic hand. Appl. Phys. Lett. 108, 103702 (2016)	2016 Mar	http://scitation.aip.org/content/aip/journal/apl/108/10/10.1063/1.4943402
B07	Wuchter P, Saffrich R, Giselbrecht S, Nies C, Lorig H, Kolb S, Ho AD, Gottwald E. Microcavity arrays as an in vitro model system of the bone marrow niche for hematopoietic stem cells. Cell Tissue Res. 2016 Jan 30. doi:10.1007/s00441-015-2348-8	2016 Jan	http://link.springer.com/article/10.1007%2Fs00441-015-2348-8
B07	Inoue S, Frank V, Hörning M, Kaufmann S, Yoshikawa HY, Madsen JP, Lewis AL, Armes SP, Tanaka M. Live cell tracking of symmetry break in actin cytoskeleton triggered by abrupt changes in micromechanical environments. Biomater Sci. 2015 Dec	2015 Dec	http://www.ncbi.nlm.nih.gov/pubmed/26347909
B07	Monzel C, Veschgini M, Madsen J, Lewis AL, Armes SP, Tanaka M. Fine Adjustment of Interfacial Potential between pH-Responsive Hydrogels and Cell-Sized Particles. Langmuir. 2015 Aug 11	2015 Aug	http://www.ncbi.nlm.nih.gov/pubmed/26190346
B07	Hoang VT, Buss EC, Wang W, Hoffmann I, Raffel S, Zepeda-Moreno A, Baran N, Wuchter P, Eckstein V, Trumpp A, Jauch A, Ho AD, Lutz C. The rarity of ALDH(+) cells is the key to separation of normal versus leukemia stem cells by ALDH activity in AML patients. Int J Cancer. 2015 Aug 1	2015 Aug	http://www.ncbi.nlm.nih.gov/pubmed/25545165
B07	Burk AS, Monzel C, Yoshikawa HY, Wuchter P, Saffrich R, Eckstein V, Tanaka M, Ho AD. Quantifying adhesion mechanisms and dynamics of human hematopoietic stem and progenitor cells. Sci Rep. 2015 Mar 31	2015 Mar	http://www.ncbi.nlm.nih.gov/pubmed/25824493
B07	Stiehl T, Baran N, Ho AD, Marciniak-Czochra A. Cell division patterns in acute myeloid leukemia stem-like cells determine clinical course: a model to predict patient survival. Cancer Res. 2015 Mar 15	2015 Mar	http://www.ncbi.nlm.nih.gov/pubmed/25614516
B07	Malcherek G, Jin N, Hückelhoven AG, Mani J, Wang L, Gern U, Diehlmann A, Wuchter P, Schmitt A, Chen B, Ho AD, Schmitt M. Mesenchymal stromal cells inhibit proliferation of virus-specific CD8(+) T cells. Leukemia. 2014 Dec	2014 Dec	http://www.ncbi.nlm.nih.gov/pubmed/25227910
B07	Wuchter P, Leinweber C, Saffrich R, Hanke M, Eckstein V, Ho AD, Grunze M, Rosenhahn A. Plerixafor induces the rapid and transient release of stromal cell-derived factor-1 alpha from human mesenchymal stromal cells and influences the migration behavior of human hematopoietic progenitor cells. Cell Tissue Res. 2014 Feb. doi: 10.1007/s00441-013-1759-7	2014 Feb	http://www.ncbi.nlm.nih.gov/pubmed/24337688
B07	Ludwig A, Saffrich R, Eckstein V, Bruckner T, Wagner W, Ho AD, Wuchter P. Functional potentials of human hematopoietic progenitor cells are maintained by mesenchymal stromal cells and not impaired by plerixafor. Cytotherapy. 2014 Jan doi: 10.1016/j.jcyt.2013.07.007	2014 Jan	http://www.ncbi.nlm.nih.gov/pubmed/24119647
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