Velten labPublications

FISHFactor: A Probabilistic Factor Model for Spatial Transcriptomics Data with Subcellular Resolution

Walter FC, Stegle O, Velten B.

Bioinformatics

2023

Spatial multiomics map of trophoblast development in early pregnancy

Arutyunyan A, Roberts K, Troulé K, Wong FCK, Sheridan MA, Kats I, Garcia-Alonso L, Velten B, Hoo R, Ruiz-Morales ER, Sancho-Serra C, Shilts J, Handfield LF, Marconato L, Tuck E, Gardner L, Mazzeo CI, Li Q, Kelava I, Wright GJ, Prigmore E, Teichmann SA, Bayraktar OA, Moffett A, Stegle O, Turco MY, Vento-Tormo R.

Nature

2023

Identifying temporal and spatial patterns of variation from multimodal data using MEFISTO

Velten B, Braunger JM, Argelaguet R, Arnol D, Wirbel J, Bredikhin D, Zeller G, Stegle O.

Nat Methods

2022

Adaptive penalization in high-dimensional regression and classification with external covariates using variational Bayes

Velten B, Huber W.

Biostatistics

2021

MOFA+: a statistical framework for comprehensive integration of multi-modal single-cell data

Argelaguet R, Arnol D, Bredikhin D, Deloro Y, Velten B, Marioni JC, Stegle O.

Genome Biol

2020

Gene expression across mammalian organ development

Cardoso-Moreira M, Halbert J, Valloton D, Velten B, Chen C, Shao Y, Liechti A, Ascenção K, Rummel C, Ovchinnikova S, Mazin PV, Xenarios I, Harshman K, Mort M, Cooper DN, Sandi C, Soares MJ, Ferreira PG, Afonso S, Carneiro M, Turner JMA, VandeBerg JL, Fallahshahroudi A, Jensen P, Behr R, Lisgo S, Lindsay S, Khaitovich P, Huber W, Baker J, Anders S, Zhang YE, Kaessmann H.

Nature

2019

Multi-Omics Factor Analysis-a framework for unsupervised integration of multi-omics data sets

Argelaguet R, Velten B, Arnol D, Dietrich S, Zenz T, Marioni JC, Buettner F, Huber W, Stegle O.

Mol Syst Biol

2018