2024

• Wittbrodt, Joachim: Grenzerfahrungen : biohybride Systeme als Thema partizipativer Wissenschaftsethik / Jochen Wittbrodt, 2024-03-13. - 5 S.
  In: Forum Marsilius-Kolleg, ISSN 2196-2839. 24(2024), 1, Seite 173-176
  DOI: 10.11588/fmk.2024.24.103697
• Suzuki, Risa; Woo, Jia Zheng; Thumberger, Thomas; Hofmann, Gero; Wittbrodt, Joachim; Tavhelidse-Suck, Tinatini: Characterizing medaka visual features using a high-throughput optomotor response assay / Risa Suzuki, Jia Zheng Woo, Thomas Thumberger, Gero Hofmann, Joachim Wittbrodt and Tinatini Tavhelid… , March 31, 2024. - 26 S. : Illustrationen
  In: bioRxiv beta. (2024) vom: März, Artikel-ID 2024.03.28.587314, Seite 1-26
  DOI: 10.1101/2024.03.28.587314
• Schütz, Nils; Wittbrodt, Joachim; Moos, Thorsten: (At the) limits of life!? : Ein Bericht zur Marsilius Academy 2023 / Nils Schütz, Jochen Wittbrodt, Thorsten Moos, 2024-03-13. - 7 S. : Illustrationen
  In: Forum Marsilius-Kolleg, ISSN 2196-2839. 24(2024), 1, Seite 71-77
  DOI: 10.11588/fmk.2024.24.103698

2023

• Medert, Rebekka; Thumberger, Thomas; Tavhelidse-Suck, Tinatini; Hub, Tobias; Kellner, Tanja; Oguchi, Yoko; Dlugosz, Sascha; Zimmermann, Frank; Wittbrodt, Joachim; Freichel, Marc: Efficient single copy integration via homology-directed repair (scHDR) by 5′modification of large DNA donor fragments in mice / Rebekka Medert, Thomas Thumberger, Tinatini Tavhelidse-Suck, Tobias Hub, Tanja Kellner, Yoko Oguchi,… , 22 February 2023. - 14 S. : Illustrationen
  In: Nucleic acids research, ISSN 1362-4962. 51(2023), 3, Artikel-ID e14, Seite 1-14
  DOI: 10.1093/nar/gkac1150
• Pakari, Kaisa; Wittbrodt, Joachim; Thumberger, Thomas: CRISPR-Fortschritte : Schnitt für Schnitt zu neuen Möglichkeiten / Kaisa Pakari, Joachim Wittbrodt, Thomas Thumberger, 21 February 2023. - 4 S.
  In: Biospektrum, ISSN 1868-6249. 29(2023), 1, Seite 25-28
  DOI: 10.1007/s12268-023-1893-z
• Gierten, Jakob; Welz, Bettina; Fitzgerald, Tomas; Thumberger, Thomas; Hummel, Oliver; Leger, Adrien; Weber, Philipp; Hassel, David; Hübner, Norbert; Birney, Ewan; Wittbrodt, Joachim: Natural genetic variation quantitatively regulates heart rate and dimension / Jakob Gierten, Bettina Welz, Tomas Fitzgerald, Thomas Thumberger, Oliver Hummel, Adrien Leger, Phili… , November 02, 2023. - 21 S.
  In: bioRxiv beta. (2023), Artikel-ID 2023.09.01.555906, Seite 1-21
  DOI: 10.1101/2023.09.01.555906
• Doering, Lino; Cornean, Alex; Thumberger, Thomas; Benjaminsen, Jørgen; Wittbrodt, Beate; Kellner, Tanja; Hammouda, Omar T.; Gorenflo, Matthias; Wittbrodt, Joachim; Gierten, Jakob: CRISPR-based knockout and base editing confirm the role of MYRF in heart development and congenital heart disease / Lino Doering, Alex Cornean, Thomas Thumberger, Joergen Benjaminsen, Beate Wittbrodt, Tanja Kellner, … , August 2023. - 14 S. : Illustrationen
  In: Disease models & mechanisms, ISSN 1754-8411. 16(2023), 8 vom: Aug., Artikel-ID dmm049811, Seite 1-14
  DOI: 10.1242/dmm.049811
• Sokolova, Natalia; Zilova, Lucie; Wittbrodt, Joachim: Unravelling the link between embryogenesis and adult stem cell potential in the ciliary marginal zone : a comparative study between mammals and teleost fish / Natalia Sokolova, Lucie Zilova, Joachim Wittbrodt, June 2023. - 9 S. : Illustrationen
  In: Cells & development, ISSN 2667-2901. 174(2023) vom: Juni, Artikel-ID 203848, Seite 1-9
  DOI: 10.1016/j.cdev.2023.203848
• Xu, Ruiyao; Wang, Xianxian; Safi, Sadia; Braunegger, Nico; Hipgrave Ederveen, Agnes; Rottmann, Michelle; Wittbrodt, Joachim; Wuhrer, Manfred; Wesslowski, Janine; Davidson, Gary: N-glycosylation of LRP6 by B3GnT2 promotes Wnt/β-Catenin signalling / Ruiyao Xu, Xianxian Wang, Sadia Safi, Nico Braunegger, Agnes Hipgrave Ederveen, Michelle Rottmann, J… , 10 March 2023. - 21 S.
  In: Cells, ISSN 2073-4409. 12(2023), 6 vom: März, Artikel-ID 863, Seite 1-21
  DOI: 10.3390/cells12060863
• Pakari, Kaisa; Wittbrodt, Joachim; Thumberger, Thomas: De novo PAM generation to reach initially inaccessible target sites for base editing / Kaisa Pakari, Joachim Wittbrodt, Thomas Thumberger, 2023. - 7 S.
  In: Development, ISSN 1477-9129. 150(2023), 2, Artikel-ID dev201115, Seite 1-7
  DOI: 10.1242/dev.201115

2022

• Pakari, Kaisa; Wittbrodt, Joachim; Thumberger, Thomas: The inceptionist’s guide to base editing : de novo PAM generation to reach initially inaccessible target-sites / Kaisa Pakari, Joachim Wittbrodt, Thomas Thumberger, July 07, 2022. - 18 S.
  In: bioRxiv beta. (2022) vom: Juli, Artikel-ID 2022.07.07.499158, Seite 1-18
  DOI: 10.1101/2022.07.07.499158
• Thumberger, Thomas; Tavhelidse-Suck, Tinatini; Gutiérrez Triana, José Arturo; Cornean, Alex; Medert, Rebekka; Welz, Bettina; Freichel, Marc; Wittbrodt, Joachim: Boosting targeted genome editing using the hei-tag / Thomas Thumberger, Tinatini Tavhelidse-Suck, Jose Arturo Gutierrez-Triana, Alex Cornean, Rebekka Med… , Mar 25, 2022. - 16 S. : Illustrationen
  In: eLife, ISSN 2050-084X. 11(2022), Artikel-ID e70558, Seite 1-16
  DOI: 10.7554/eLife.70558
• Beedgen, Lars; Hüllen, Andreas; Gücüm, Sevinç; Thumberger, Thomas; Wittbrodt, Joachim; Thiel, Christian: A rapid and simple procedure for the isolation and cultivation of fibroblast-like cells from medaka and zebrafish embryos and fin clip biopsies / Lars Beedgen, Andreas Hüllen, Sevinç Gücüm, Thomas Thumberger, Jochen Wittbrodt, Christian Thiel. -
  London: Sage Publications, 21 Jun. 2022. - 1 Online-Ressource (9 Seiten)
  DOI: 10.11588/heidok.00031793
• Cornean, Alex; Gierten, Jakob; Welz, Bettina; Mateo, Juan L.; Thumberger, Thomas; Wittbrodt, Joachim: Precise in vivo functional analysis of DNA variants with base editing using ACEofBASEs target prediction / Alex Cornean, Jakob Gierten, Bettina Welz, Juan Luis Mateo, Thomas Thumberger, Joachim Wittbrodt, 04 April 2022. - 34 S.
  In: eLife, ISSN 2050-084X. 11(2022), Artikel-ID e72124, Seite 1-34
  DOI: 10.7554/eLife.72124
• Aghaallaei, Nargessadat; Agarwal, Rashi; Benjaminsen, Jørgen; Lust, Katharina; Bajoghli, Baubak; Wittbrodt, Joachim; Feijoo, Carmen G.: Antigen-presenting cells and T cells interact in a specific area of the intestinal mucosa defined by the Ccl25-Ccr9 axis in medaka / Narges Aghaallaei, Rashi Agarwal, Joergen Benjaminsen, Katharina Lust, Baubak Bajoghli, Joachim Witt… , 03 February 2022. - 11 S.
  In: Frontiers in immunology, ISSN 1664-3224. 13(2022), Artikel-ID 812899, Seite 1-11
  DOI: 10.3389/fimmu.2022.812899
• Leger, Adrien; Brettell, Ian; Monahan, Jack; Barton, Carl; Wolf, Nadeshda; Kusminski, Natalja; Herder, Cathrin; Aadepu, Narendar; Becker, Clara; Gierten, Jakob; Hammouda, Omar T.; Hasel, Eva; Lischik, Colin; Lust, Katharina; Sokolova, Natalia; Suzuki, Risa; Tavhelidse-Suck, Tinatini; Thumberger, Thomas; Tsingos, Erika; Watson, Philip; Welz, Bettina; Naruse, Kiyoshi; Loosli, Felix; Wittbrodt, Joachim; Birney, Ewan; Fitzgerald, Tomas: Genomic variations and epigenomic landscape of the medaka inbred Kiyosu-Karlsruhe (MIKK) panel / Adrien Leger, Ian Brettell, Jack Monahan, Carl Barton, Nadeshda Wolf, Natalja Kusminski, Cathrin Her… , 21 February 2022. - 24 S.
  In: Genome biology, ISSN 1474-760X. 23(2022), Artikel-ID 58, Seite 1-24
  DOI: 10.1186/s13059-022-02602-4
• Fitzgerald, Tomas; Brettell, Ian; Leger, Adrien; Wolf, Nadeshda; Kusminski, Natalja; Monahan, Jack; Barton, Carl; Herder, Cathrin; Aadepu, Narendar; Gierten, Jakob; Becker, Clara; Hammouda, Omar; Hasel, Eva Mareike; Lischik, Colin Q.; Lust, Katharina; Sokolova, Natalia; Suzuki, Risa; Tsingos, Erika; Tavhelidse-Suck, Tinatini; Thumberger, Thomas; Watson, Philip; Welz, Bettina; Khouja, Nadia; Naruse, Kiyoshi; Birney, Ewan; Wittbrodt, Joachim; Loosli, Felix: The Medaka Inbred Kiyosu-Karlsruhe (MIKK) panel / Tomas Fitzgerald, Ian Brettell, Adrien Leger, Nadeshda Wolf, Natalja Kusminski, Jack Monahan, Carl B… , 21 February 2022. - 32 S.
  In: Genome biology, ISSN 1474-760X. 23(2022), Artikel-ID 59, Seite 1-32
  DOI: 10.1186/s13059-022-02623-z

2021

• Kohärente, dosiseffiziente Röntgenbildgebung von biologischen Modellorganismen : Schlussbericht : Verbund: 05K2016 "CODE-VITA"$dZuwendungsempfänger: Centre for Organismal Studies (COS), Universität Heidelberg ; Projektleitung: Prof. Dr. Joachim Wittbrodt ; zusätzlicher Name: Frederike Seibold. -
  [Heidelberg]: Universität Heidelberg, 20.08.2021. - 1 Online-Ressource (18 Seiten, 3,96 MB) : Illustrationen
  DOI: 10.2314/KXP:1826639292
• Kohärente, dosiseffiziente Röntgenbildgebung von biologischen Modellorganismen : Schlussbericht : Verbund: 05K2016 "CODE-VITA"$dZuwendungsempfänger: Centre for Organismal Studies (COS), Universität Heidelberg ; Projektleitung: Prof. Dr. Joachim Wittbrodt ; zusätzlicher Name: Frederike Seibold. -
  [Heidelberg]: Universität Heidelberg, 20.08.2021. - 13, 4 Blätter : Illustrationen
• Cornean, Alex; Gierten, Jakob; Welz, Bettina; Mateo, Juan L.; Thumberger, Thomas; Wittbrodt, Joachim: Precise in vivo functional analysis of DNA variants with base editing using ACEofBASEs target prediction / authors: Alex Cornean, Jakob Gierten, Bettina Welz, Juan L. Mateo, Thomas Thumberger, Joachim Wittbr… , July 26, 2021. - 63 S. : Illustrationen
  In: bioRxiv beta. (2021) vom: Juli, Artikel-ID 2021.07.26.453883, Seite 1-63
  DOI: 10.1101/2021.07.26.453883
• Hammouda, Omar; Wu, Meng Yue; Kaul, Verena; Gierten, Jakob; Thumberger, Thomas; Wittbrodt, Joachim: In vivo identification and validation of novel potential predictors for human cardiovascular diseases / Omar T. Hammouda, Meng Yue Wu, Verena Kaul, Jakob Gierten, Thomas Thumberger and Joachim Wittbrodt, June 21, 2021. - 42 S. : Illustrationen
  In: bioRxiv beta. (2021) vom: Juni, Artikel-ID 2021.02.03.429563, Seite 1-42
  DOI: 10.1101/2021.02.03.429563
• Thumberger, Thomas; Tavhelidse-Suck, Tinatini; Gutiérrez Triana, José Arturo; Medert, Rebekka; Cornean, Alex; Welz, Bettina; Freichel, Marc; Wittbrodt, Joachim: Hei-tag: a highly efficient tag to boost targeted genome editing / Thomas Thumberger, Tinatini Tavhelidse, Jose Arturo Gutierrez-Triana, Rebekka Medert, Alex Cornean, … , June 10, 2021. - 19 S. : Illustrationen
  In: bioRxiv beta. (2021) vom: Juni, Artikel-ID 2021.05.27.445956, Seite 1-19
  DOI: 10.1101/2021.05.27.445956
• Fitzgerald, Tomas; Brettell, Ian; Leger, Adrien; Wolf, Nadeshda; Kusminski, Natalja; Monahan, Jack; Barton, Carl; Herder, Cathrin; Aadepu, Narendar; Gierten, Jakob; Becker, Clara; Hammouda, Omar; Hasel, Eva Mareike; Lischik, Colin Q.; Lust, Katharina; Suzuki, Risa; Tsingos, Erika; Tavhelidse-Suck, Tinatini; Thumberger, Thomas; Watson, Philip; Welz, Bettina; Khouja, Nadia; Naruse, Kiyoshi; Birney, Ewan; Wittbrodt, Joachim; Loosli, Felix: The Medaka Inbred Kiyosu-Karlsruhe (MIKK) panel / Tomas Fitzgerald, Ian Brettell, Adrien Leger, Nadeshda Wolf, Natalja Kusminski, Jack Monahan, Carl B… , May 21, 2021. - 34 S.
  In: bioRxiv beta. (2021) vom: Mai, Artikel-ID 2021.05.17.444412, Seite 1-34
  DOI: 10.1101/2021.05.17.444412
• Medert, Rebekka; Thumberger, Thomas; Tavhelidse-Suck, Tinatini; Hub, Tobias; Kellner, Tanja; Oguchi, Yoko; Dlugosz, Sascha; Zimmermann, Frank; Wittbrodt, Joachim; Freichel, Marc: Efficient single copy integration via homology-directed repair (scHDR) by 5’modification of large DNA donor fragments in mice / Rebekka Medert, Thomas Thumberger, Tinatini Tavhelidse, Tobias Hub, Tanja Kellner, Yoko Oguchi, Sasc… , September 30, 2021. - 37 S. : Illustrationen
  In: bioRxiv beta. (2021) vom: Sept., Artikel-ID 2021.09.30.462539, Seite 1-37
  DOI: 10.1101/2021.09.30.462539
• Hammouda, Omar; Wu, Meng Yue; Kaul, Verena; Gierten, Jakob; Thumberger, Thomas; Wittbrodt, Joachim: In vivo identification and validation of novel potential predictors for human cardiovascular diseases / Omar T. Hammouda, Meng Yue Wu, Verena Kaul, Jakob Gierten, Thomas Thumberger, Joachim Wittbrodt, December 17, 2021. - 20 S.
  In: PLOS ONE, ISSN 1932-6203. 16(2021), 12, Artikel-ID e0261572, Seite 1-20
  DOI: 10.1371/journal.pone.0261572
• Zilova, Lucie; Weinhardt, Venera; Tavhelidse-Suck, Tinatini; Schlagheck, Christina; Thumberger, Thomas; Wittbrodt, Joachim: Fish primary embryonic pluripotent cells assemble into retinal tissue mirroring in vivo early eye development - in vivo imaging of OV formation / Lucie Zilova, Venera Weinhardt, Tinatini Tavhelidse, Christina Schlagheck, Thomas Thumberger, Joachi… . -
  Heidelberg: Universität, 2021-07-06. - 1 Online-Ressource (12 Files)
  DOI: 10.11588/data/AOSUS8
• Cirksena, Karsten; Hutte, Hermann J.; Shcherbakova, Aleksandra; Thumberger, Thomas; Sakson, Roman; Weiss, Stefan; Jensen, Lars Riff; Friedrich, Alina; Todt, Daniel; Kuss, Andreas W.; Ruppert, Thomas; Wittbrodt, Joachim; Bakker, Hans; Buettner, Falk F. R.: The C-mannosylome of human induced pluripotent stem cells implies a role for ADAMTS16 C-pannosylation in eye development / Karsten Cirksena, Hermann J. Hutte, Aleksandra Shcherbakova, Thomas Thumberger, Roman Sakson, Stefan… , May 8, 2021. - 14 S.
  In: Molecular & cellular proteomics, ISSN 1535-9484. 20(2021), Artikel-ID 100092, Seite 1-14
  DOI: 10.1016/j.mcpro.2021.100092
• Zilova, Lucie; Weinhardt, Venera; Tavhelidse-Suck, Tinatini; Schlagheck, Christina; Thumberger, Thomas; Wittbrodt, Joachim: Fish primary embryonic pluripotent cells assemble into retinal tissue mirroring in vivo early eye development / Lucie Zilova, Venera Weinhardt, Tinatini Tavhelidse, Christina Schlagheck, Thomas Thumberger, Joachi… , 12 July 2021. - 26 S.
  In: eLife, ISSN 2050-084X. 10(2021), Artikel-ID e66998, Seite 1-26
  DOI: 10.7554/eLife.66998
• Becker, Clara; Lust, Katharina; Wittbrodt, Joachim: Igf signaling couples retina growth with body growth by modulating progenitor cell division / Clara Becker, Katharina Lust and Joachim Wittbrodt, 15 April 2021. - 13 S.
  In: Development, ISSN 1477-9129. 148(2021), 7, Artikel-ID dev199133, Seite 1-13
  DOI: 10.1242/dev.199133
• Aghaallaei, Nargessadat; Dick, Advaita M.; Tsingos, Erika; Inoue, Daigo; Hasel, Eva Mareike; Thumberger, Thomas; Toyoda, Atsushi; Leptin, Maria; Wittbrodt, Joachim; Bajoghli, Baubak: αβ/γδ T cell lineage outcome is regulated by intrathymic cell localization and environmental signals / Narges Aghaallaei, Advaita M. Dick, Erika Tsingos, Daigo Inoue, Eva Hasel, Thomas Thumberger, Atsush… , 14 July 2021. - 13 S.
  In: Science advances, ISSN 2375-2548. 7(2021), 29, Artikel-ID eabg3613, Seite 1-13
  DOI: 10.1126/sciadv.abg3613
• Wagner, Nils; Beuttenmueller, Fynn; Norlin, Nils; Gierten, Jakob; Boffi, Juan Carlos; Wittbrodt, Joachim; Weigert, Martin; Hufnagel, Lars; Prevedel, Robert; Kreshuk, Anna: Deep learning-enhanced light-field imaging with continuous validation / Nils Wagner, Fynn Beuttenmueller, Nils Norlin, Jakob Gierten, Juan Carlos Boffi, Joachim Wittbrodt, … , 7 May 2021. - 7 S.
  In: Nature methods, ISSN 1548-7105. 18(2021), 5, Seite 557-563
  DOI: 10.1038/s41592-021-01136-0
• Gücüm, Sevinç; Sakson, Roman; Hoffmann, Marcus; Grote, Valerian; Becker, Clara; Pakari, Kaisa; Beedgen, Lars; Thiel, Christian; Rapp, Erdmann; Ruppert, Thomas; Thumberger, Thomas; Wittbrodt, Joachim: A patient-based medaka alg2 mutant as a model for hypo-N-glycosylation / Sevinç Gücüm, Roman Sakson, Marcus Hoffmann, Valerian Grote, Clara Becker, Kaisa Pakari, Lars Beedge… , 09 June 2021. - 16 S.
  In: Development, ISSN 1477-9129. 148(2021), 11, Artikel-ID dev.199385, Seite 1-16
  DOI: 10.1242/dev.199385

2020

• Bosze, Bernadett; Ono, Yosuke; Mattes, Benjamin; Sinner, Claude; Gourain, Victor; Thumberger, Thomas; Tlili, Sham; Wittbrodt, Joachim; Saunders, Timothy E.; Strähle, Uwe; Schug, Alexander; Scholpp, Steffen: Pcdh18a regulates endocytosis of E-cadherin during axial mesoderm development in zebrafish / Bernadett Bosze, Yosuke Ono, Benjamin Mattes, Claude Sinner, Victor Gourain, Thomas Thumberger, Sham… , 01 June 2020. - 18 S.
  In: Histochemistry and cell biology, ISSN 1432-119X. 154(2020), 5, Seite 463-480
  DOI: 10.1007/s00418-020-01887-5
• Meyer, Hannah V.; Dawes, Timothy J. W.; Serrani, Marta; Bai, Wenjia; Tokarczuk, Paweł; Cai, Jiashen; de Marvao, Antonio; Henry, Albert; Lumbers, R. Thomas; Gierten, Jakob; Thumberger, Thomas; Wittbrodt, Joachim; Ware, James S.; Rueckert, Daniel; Matthews, Paul M.; Prasad, Sanjay K.; Costantino, Maria L.; Cook, Stuart A.; Birney, Ewan; O’Regan, Declan P.: Genetic and functional insights into the fractal structure of the heart / Hannah V. Meyer, Timothy J.W. Dawes, Marta Serrani, Wenjia Bai, Paweł Tokarczuk, Jiashen Cai, Antoni… , 19 August 2020. - 6 S.
  In: Nature, ISSN 1476-4687. 584(2020), 7822, Seite 589-594
  DOI: 10.1038/s41586-020-2635-8
• Gücüm, Sevinç; Sakson, Roman; Hoffmann, Marcus; Grote, Valerian; Beedgen, Lars; Thiel, Christian; Rapp, Erdmann; Ruppert, Thomas; Wittbrodt, Joachim; Thumberger, Thomas: The medaka alg2 mutant is a model for hypo-N-glycosylation-associated retinitis pigmentosa / Sevinç Gücüm, Roman Sakson, Marcus Hoffmann, Valerian Grote, Lars Beedgen, Christian Thiel, Erdmann … , August 24, 2020. - 40 S.
  In: bioRxiv beta. (2020) vom: Aug., Artikel-ID 2020.08.20.260430, Seite 1-40
  DOI: 10.1101/2020.08.20.260430
• Lösel, Philipp; van de Kamp, Thomas; Jayme, Alejandra; Ershov, Alexey; Faragó, Tomáš; Pichler, Olaf; Tan Jerome, Nicholas; Aadepu, Narendar; Bremer, Sabine; Chilingaryan, Suren A.; Heethoff, Michael; Kopmann, Andreas; Odar, Janes; Schmelzle, Sebastian; Zuber, Marcus; Wittbrodt, Joachim; Baumbach, Tilo; Heuveline, Vincent: Introducing Biomedisa as an open-source online platform for biomedical image segmentation / Philipp D. Lösel, Thomas van de Kamp, Alejandra Jayme, Alexey Ershov, Tomáš Faragó, Olaf Pichler, Ni… , 04 November 2020. - 14 S.
  In: Nature Communications, ISSN 2041-1723. 11(2020), Artikel-ID 5577, Seite 1-14
  DOI: 10.1038/s41467-020-19303-w
• Gierten, Jakob; Pylatiuk, Christian; Hammouda, Omar; Schock, Christian; Stegmaier, Johannes; Wittbrodt, Joachim; Gehrig, Jochen; Loosli, Felix: Automated high-throughput heartbeat quantification in medaka and zebrafish embryos under physiological conditions / Jakob Gierten, Christian Pylatiuk, Omar T. Hammouda, Christian Schock, Johannes Stegmaier, Joachim W… , 06 February 2020. - 12 S.
  In: Scientific reports, ISSN 2045-2322. 10(2020) Artikel-Nummer 2046, 12 Seiten
  DOI: 10.1038/s41598-020-58563-w

2019

• Vázquez-Marín, Javier; Gutiérrez Triana, José Arturo; Almuedo-Castillo, María; Buono, Lorena; Gómez-Skarmeta, José Luis; Mateo, Juan L.; Wittbrodt, Joachim; Martínez-Morales, Juan Ramón: yap1b, a divergent Yap/Taz family member, cooperates with yap1 in survival and morphogenesis via common transcriptional targets / Javier Vázquez-Marín, José Arturo Gutiérrez-Triana, María Almuedo-Castillo, Lorena Buono, José Luis … , 21 June 2019. - 15 S.
  In: Development, ISSN 1477-9129. 146(2019), 13
  DOI: 10.1242/dev.173286
• Gierten, Jakob; Pylatiuk, Christian; Hammouda, Omar; Schock, Christian; Stegmaier, Johannes; Wittbrodt, Joachim; Gehrig, Jochen; Loosli, Felix: Automated high-throughput heart rate measurement in medaka and zebrafish embryos under physiological conditions / Jakob Gierten, Christian Pylatiuk, Omar Hammouda, Christian Schock, Johannes Stegmaier, Joachim Witt… . -
  Karlsruhe, [2019]. - 1 Online-Ressource (39 Seiten)
  DOI: 10.1101/548594
• Dasyani, Manish; Centanin, Lázaro; Wittbrodt, Joachim: Lineage tracing of col10a1 cells identifies distinct progenitor populations for osteoblasts and joint cells in the regenerating fin of medaka (Oryzias latipes) / Manish Dasyani, Wen Hui Tan, Sudha Sundaram, Nurgul Imangali, Lazaro Centanin, Joachim Wittbrodt, Ch… , 17 July 2019. - 15 S.
  In: Developmental biology, ISSN 1095-564X. 455(2019), 1, Seite 85-99
  DOI: 10.1016/j.ydbio.2019.07.012
• Tsingos, Erika; Höckendorf, Burkhard; Sütterlin, Thomas; Kirchmaier, Stephan; Grabe, Niels; Centanin, Lázaro; Wittbrodt, Joachim: Retinal stem cells modulate proliferative parameters to coordinate post-embryonic morphogenesis in the eye of fish / Erika Tsingos, Burkhard Höckendorf, Thomas Sütterlin, Stephan Kirchmaier, Niels Grabe, Lazaro Centan… , Mar 26, 2019. - 38 S.
  In: eLife, ISSN 2050-084X. 8(2019) Artikel-Nummer e42646, 38 Seiten
  DOI: 10.7554/eLife.42646
• Wagner, Nils; Gierten, Jakob; Wittbrodt, Joachim: Instantaneous isotropic volumetric imaging of fast biological processes / Nils Wagner, Nils Norlin, Jakob Gierten, Gustavo de Medeiros, Bálint Balázs, Joachim Wittbrodt, Lars… , 29 April 2019. - 4 S.
  In: Nature methods, ISSN 1548-7105. 16(2019), 6, Seite 497-200
  DOI: 10.1038/s41592-019-0393-z
• Hammouda, Omar; Böttger, Frank; Wittbrodt, Joachim; Thumberger, Thomas: Swift large-scale examination of directed genome editing / Omar T. Hammouda, Frank Böttger, Joachim Wittbrodt, Thomas Thumberger, March 5, 2019. - 11 S.
  In: PLOS ONE, ISSN 1932-6203. 14(2019), 3, Artikel-ID e0213317, Seite 1-11
  DOI: 10.1371/journal.pone.0213317
• Lischik, Colin Q.; Adelmann, Leonie; Wittbrodt, Joachim: Enhanced in vivo-imaging in medaka by optimized anaesthesia, fluorescent protein selection and removal of pigmentation / Colin Q. Lischik, Leonie Adelmann, Joachim Wittbrodt, March 7, 2019. - 19 S.
  In: PLOS ONE, ISSN 1932-6203. 14(2019,3) Artikel-Nummer e0212956, 19 Seiten
  DOI: 10.1371/journal.pone.0212956
• Kikuchi, Mariko; Gutiérrez Triana, José Arturo; Mateo, Juan L.; Wittbrodt, Joachim: Novel components of germline sex determination acting downstream of foxl3 in medaka / Mariko Kikuchi, Toshiya Nishimura, Daisuke Saito, Shuji Shigenobu, Ritsuko Takada, José Arturo Gutie… , 2019. - 10 S.
  In: Developmental biology, ISSN 1095-564X. 445(2019), 1, Seite 80-89
  DOI: 10.1016/j.ydbio.2018.10.019

2018

• Bosze, Bernadett; Mattes, Benjamin; Sinner, Claude; Stricker, Kathrin; Gourain, Victor Philippe Marie; Thumberger, Thomas; Tlili, Sham; Weber, Sabrina; Wittbrodt, Joachim; Saunders, Timothy E.; Strähle, Uwe; Schug, Alexander; Scholpp, Steffen: Pcdh18a-positive tip cells instruct notochord formation in zebrafish / Bernadett Bosze, Benjamin Mattes, Claude Sinner, Kathrin Stricker, Victor Gourain, Thomas Thumberger… , January 31, 2018. - 47 S. : Illustrationen
  In: bioRxiv beta. (2018) vom: Jan., Artikel-ID 257717, Seite 1-47
  DOI: 10.1101/257717
• Inoue, Daigo; Wittbrodt, Joachim; Gruss, Oliver: Loss and rebirth of the animal microtubule organizing center : how maternal expression of centrosomal proteins cooperates with the sperm centriole in zygotic centrosome reformation / Daigo Inoue, Joachim Wittbrodt, Oliver J. Gruss, 09 March 2018. - 9 S.
  In: Bioessays, ISSN 1521-1878. 40(2018,4) Artikel-Nummer p1700135, 9 Seiten
  DOI: 10.1002/bies.201700135
• Lust, Katharina; Wittbrodt, Joachim: Activating the regenerative potential of Müller glia cells in a regeneration-deficient retina / Katharina Lust, Joachim Wittbrodt, Jan 29, 2018
  In: eLife, ISSN 2050-084X. 7(2018) Artikel-Nummer e32319
  DOI: 10.7554/eLife.32319
• Weinhardt, Venera; Wernet, Tobias; Wittbrodt, Joachim: Quantitative morphometric analysis of adult teleost fish by X-ray computed tomography / Venera Weinhardt, Roman Shkarin, Tobias Wernet, Joachim Wittbrodt, Tilo Baumbach & Felix Loosli, 08 November 2018. - 12 S.
  In: Scientific reports, ISSN 2045-2322. 8(2018) Artikel-Nummer 16531, 12 Seiten
  DOI: 10.1038/s41598-018-34848-z
• Pérez Saturnino, Alicia; Lust, Katharina; Wittbrodt, Joachim: Notch signalling patterns retinal composition by regulating atoh7 during post-embryonic growth / Alicia Pérez Saturnino, Katharina Lust and Joachim Wittbrodt, 9 November 2018
  In: Development, ISSN 1477-9129. 145(2018,21) Artikel-Nummer dev169698, 11 Seiten
  DOI: 10.1242/dev.169698
• Roussigné, Myriam; Tsingos, Erika; Kuchling, Franz; Wittbrodt, Joachim; Carl, Matthias: Left/right asymmetric collective migration of parapineal cells is mediated by focal FGF signaling activity in leading cells / Myriam Roussigné, Lu Wei, Erika Tsingos, Franz Kuchling, Mansour Alkobtawi, Matina Tsalavouta, Joach… , October 3, 2018. - 10 S.
  In: Proceedings of the National Academy of Sciences of the United States of America, ISSN 1091-6490. 115(2018), 42, Seite E9812-E9821
  DOI: 10.1073/pnas.1812016115
• Gutiérrez Triana, José Arturo; Tavhelidse-Suck, Tinatini; Thumberger, Thomas; Thomas, Isabelle; Wittbrodt, Beate; Kellner, Tanja; Anlas, Kerim; Tsingos, Erika; Wittbrodt, Joachim: Efficient single-copy HDR by 5' modified long dsDNA donors / Jose Arturo Gutierrez-Triana, Tinatini Tavhelidse, Thomas Thumberger, Isabelle Thomas, Beate Wittbro… , Aug 29, 2018
  In: eLife, ISSN 2050-084X. 7(2018) Artikel-Nummer e39468, 41 Seiten
  DOI: 10.7554/eLife.39468
• Wittbrodt, Joachim; Birschmann, Nils: Goodbye USA - welcome Germany : Forschung in Deutschland / Joachim Wittbrodt. -
  Heidelberg: Universitätsbibliothek Heidelberg, 24 Mai 2018. - 1 Online-Ressource
  (Campus-Report bei Uni-Radio Baden ; 9 Mai 2018)
• Wittbrodt, Joachim; Birschmann, Nils: Berechtigung der Grundlagenforschung / Joachim Wittbrodt. -
  Heidelberg: Universitätsbibliothek Heidelberg, 27 Apr. 2018. - 1 Online-Ressource
  (Campus-Report bei Uni-Radio Baden ; 25 April 2018)
  DOI: 10.11588/heidok.00024418

2017

• Inoue, Daigo; Stemmer, Manuel; Thumberger, Thomas; Ruppert, Thomas; Bärenz, Felix; Wittbrodt, Joachim; Gruss, Oliver: Expression of the novel maternal centrosome assembly factor Wdr8 is required for vertebrate embryonic mitoses / Daigo Inoue, Manuel Stemmer, Thomas Thumberger, Thomas Ruppert, Felix Bärenz, Joachim Wittbrodt, and… , 18 Jan 2017. - 12 S.
  In: Nature Communications, ISSN 2041-1723. 8(2017), Artikel-ID 14090
  DOI: 10.1038/ncomms14090
• Kuri Rodríguez, Paola Sofía; Thumberger, Thomas; Wittbrodt, Joachim: Dynamics of in vivo ASC speck formation / Paola Kuri, Nicole L. Schieber, Thomas Thumberger, Joachim Wittbrodt, Yannick Schwab, and Maria Lept… , 12 July 2017. - 19 S.
  In: The journal of cell biology, ISSN 1540-8140. 216(2017), 9, Seite 2891-2909
  DOI: 10.1083/jcb.201703103
• Shi, Dongbo; Tavhelidse-Suck, Tinatini; Thumberger, Thomas; Wittbrodt, Joachim; Greb, Thomas: Bifacial stem cell niches in fish and plants / Dongbo Shi, Tinatini Tavhelidse, Thomas Thumberger, Joachim Wittbrodt and Thomas Greb, 24 February 2017. - 6 S.
  In: Current opinion in genetics & development, ISSN 1879-0380. 45(2017), Seite 28-33
  DOI: 10.1016/j.gde.2017.02.002
• Pereiro, Luisa; Wittbrodt, Joachim: Gastrulation in an annual killifish : molecular and cellular events during germ layer formation in Austrolebias / Luisa Pereiro, Felix Loosli, Juan Fernández, Steffen Härtel, Joachim Wittbrodt and Miguel L. Concha. - 15 S.
  In: Developmental dynamics, ISSN 1097-0177. 246(2017), 11, S. 812-826
  DOI: 10.1002/dvdy.24496
• Kirchmaier, Stephan; Lust, Katharina; Wittbrodt, Joachim: Generation of DNA constructs using the golden GATEway cloning method / Stephan Kirchmaier, Katharina Lust, Jochen Wittbrodt. - 12 S.
  In: Synthetic DNA. (2017), S. 157-168
  DOI: 10.1007/978-1-4939-6343-0_12

2016

• Nicolás-Pérez, María; Kuchling, Franz; Letelier, Joaquín; Polvillo, Rocío; Wittbrodt, Joachim; Martínez-Morales, Juan R: Analysis of cellular behavior and cytoskeletal dynamics reveal a constriction mechanism driving optic cup morphogenesis / María Nicolás-Pérez, Franz Kuchling, Joaquín Letelier, Rocío Polvillo, Jochen Wittbrodt, Juan R Mart… , 31 October 2016. - 24 S.
  In: eLife, ISSN 2050-084X. 5(2016) Artikel-Nummer 15797, 24 Seiten
  DOI: 10.7554/eLife.15797
• Gutiérrez Triana, José Arturo; Mateo, Juan L.; Ibberson, David; Ryu, Soojin; Wittbrodt, Joachim: iDamIDseq and iDEAR : an improved method and computational pipeline to profile chromatin-binding proteins / Jose Arturo Gutierrez-Triana, Juan L. Mateo, David Ibberson, Soojin Ryu and Joachim Wittbrodt, 6 September 2016. - 7 S.
  In: Development, ISSN 1477-9129. 143(2016), 22, Seite 4272-4278
  DOI: 10.1242/dev.139261
• Kromm, Dimitri; Thumberger, Thomas; Wittbrodt, Joachim: An eye on light-sheet microscopy / D. Kromm, T. Thumberger, J. Wittbrodt, 27 February 2016. - 19 S.
  In: Cellular biology. (2016), Seite 105-123
  DOI: 10.1016/bs.mcb.2016.01.001
• Lust, Katharina; Sinn, Rebecca; Pérez Saturnino, Alicia; Centanin, Lázaro; Wittbrodt, Joachim: De novo neurogenesis by targeted expression of atoh7 to Müller glia cells / Katharina Lust, Rebecca Sinn, Alicia Pérez Saturnino, Lázaro Centanin and Joachim Wittbrodt, 1 June 2016. - 10 S.
  In: Development, ISSN 1477-9129. 143(2016), 11, Seite 1874-1883
  DOI: 10.1242/dev.135905
• "Implementation of X-ray hierarchical imaging for life sciences: application to functional genomics and regenerative biology" : final report / Institution: Dept. of Molecular Developmental Biology and Physiology, Centre for Organismal Studies,… . -
  Heidelberg: Dept. of Molecular Developmental Biology and Physiology, Centre for Organismal Studies, Heidelberg University, 08.08.2016. - 1 Online-Ressource (21 Seiten, 1,35 MB) : Illustrationen, Diagramme
  DOI: 10.2314/GBV:887686494
• "Implementation of X-ray hierarchical imaging for life sciences: application to functional genomics and regenerative biology" : final report / Institution: Dept. of Molecular Developmental Biology and Physiology, Centre for Organismal Studies,… . -
  Heidelberg: Dept. of Molecular Developmental Biology and Physiology, Centre for Organismal Studies, Heidelberg University, 08.08.2016. - 20 Seiten : Illustrationen, Diagramme
• Aghaallaei, Nargessadat; Gruhl, Franziska; Lischik, Colin Q.; Wernet, Tobias; Weinhardt, Venera; Centanin, Lázaro; Loosli, Felix; Baumbach, Tilo; Wittbrodt, Joachim: Identification, visualization and clonal analysis of intestinal stem cells in fish / Narges Aghaallaei, Franziska Gruhl, Colin Q. Schaefer, Tobias Wernet, Venera Weinhardt, Lázaro Centa… , 2016. - 11 S.
  In: Development, ISSN 1477-9129. 143(2016), 19, Seite 3470-3480
  DOI: 10.1242/dev.134098
• Friedrich, Jana; Sorge, Sebastian; Bujupi, Fatmire; Eichenlaub, Michael P.; Schulz, Natalie G.; Wittbrodt, Joachim; Lohmann, Ingrid: Hox function is required for the development and maintenance of the Drosophila feeding motor unit / Jana Friedrich, Sebastian Sorge, Fatmire Bujupi, Michael P. Eichenlaub, Natalie G. Schulz, Jochen Wi… . - 11 S.
  In: Cell reports, ISSN 2211-1247. 14(2016), S. 1-11
  DOI: 10.1016/j.celrep.2015.12.077
• Alonso-Barba, Juan I.; Wittbrodt, Joachim; Mateo, Juan L.: MEPD : medaka expression pattern database, genes and more / Juan I. Alonso-Barba, Raza-Ur Rahman, Joachim Wittbrodt and Juan L. Mateo. - 3 S.
  In: Nucleic acids research, ISSN 1362-4962. 44(2016), D1, S. D819-D821
  DOI: 10.1093/nar/gkv1029
• Zhang, Ping; Wittbrodt, Joachim: Expression screening using a Medaka cDNA library identifies evolutionarily conserved regulators of the p53/Mdm2 pathway / Ping Zhang, Anne Sophie Kratz, Mohammed Salama, Seham Elabd, Thorsten Heinrich, Joachim Wittbrodt, C… . -
  London: BioMed Central, 2016. - 1 Online-Ressource (9 Seiten)

2015

• Mateo, Juan L.; Ettwiller, Laurence; Wittbrodt, Joachim: Characterization of the neural stem cell gene regulatory network identifies OLIG2 as a multifunctional regulator of self-renewal / Juan L. Mateo, Debbie L. C. van den Berg, Maximilian Haeussler, Daniela Drechsel, Zachary B. Gaber, … . - 16 S.
  In: Genome research, ISSN 1549-5469. 25(2015), 1, S. 41-56
  DOI: 10.1101/gr.173435.114
• Kirchmaier, Stephan; Wittbrodt, Joachim: The genomic and genetic toolbox of the teleost medaka (Oryzias latipes) / Stephan Kirchmaier, Kiyoshi Naruse, Joachim Wittbrodt, and Felix Loosli. - 14 S.
  In: Genetics, ISSN 1943-2631. 199(2015), 4, S. 905-918
  DOI: 10.1534/genetics.114.173849
• Reinhardt, Robert; Centanin, Lázaro; Tavhelidse-Suck, Tinatini; Inoue, Daigo; Wittbrodt, Beate; Wittbrodt, Joachim: Sox2, Tlx, Gli3, and Her9 converge on Rx2 to define retinal stem cells in vivo / Robert Reinhardt, Lázaro Centanin, Tinatini Tavhelidse, Daigo Inoue, Beate Wittbrodt, Jean-Paul Conc… , April 23, 2015. - 17 S.
  In: The EMBO journal, ISSN 1460-2075. 34(2015), 11, Seite 1572-1588
  DOI: 10.15252/embj.201490706
• Auer, Thomas; Wittbrodt, Joachim: Deletion of a kinesin I motor unmasks a mechanism of homeostatic branching control by neurotrophin-3 / Thomas O. Auer, Tong Xiao, Valerie Bercier, Christoph Gebhardt, Karine Duroure, Jean-Paul Concordet,… , June 15, 2015. - 26 S.
  In: eLife, ISSN 2050-084X. 4(2015) Artikel-Nr. e05061, 26 Seiten
  DOI: 10.7554/eLife.05061
• Bajoghli, Baubak; Inoue, Daigo; Aghaallaei, Nargessadat; Thumberger, Thomas; Wittbrodt, Joachim: Noninvasive in toto imaging of the thymus reveals heterogeneous migratory behavior of developing T cells / Baubak Bajoghli, Paola Kuri, Daigo Inoue, Narges Aghaallaei, Marleen Hanelt, Thomas Thumberger, Matt… . - 10 S.
  In: The journal of immunology, ISSN 1550-6606. 195(2015), 5, S. 2177-2186
  DOI: 10.4049/jimmunol.1500361
• Zhang, Ping; Wittbrodt, Joachim: Expression screening using a Medaka cDNA library identifies evolutionarily conserved regulators of the p53/Mdm2 pathway / Ping Zhang, Anne Sophie Kratz, Mohammed Salama, Seham Elabd, Thorsten Heinrich, Joachim Wittbrodt, C…
  In: BMC biotechnology, ISSN 1472-6750. 15(2015,1), Artikel-Nr. 92, 9 Seiten
  DOI: 10.1186/s12896-015-0208-y
• Beccari, Leonardo; Souren, Marcel; Wittbrodt, Beate; Wittbrodt, Joachim: A trans-regulatory code for the forebrain expression of Six3.2 in the medaka fish / Leonardo Beccari, Raquel Marco-Ferreres, Noemi Tabanera, Anna Manfredi, Marcel Souren, Beate Wittbro… . - 16 S.
  In: The journal of biological chemistry, ISSN 1083-351X. 290(2015), 45, S. 26927-26942
  DOI: 10.1074/jbc.M115.681254
• Zhang, Ping; Yan, Hualong; Wittbrodt, Joachim: TRIM25 has a dual function in the p53/Mdm2 circuit / P. Zhang, S. Elabd, S. Hammer, V. Solozobova, H. Yan, F. Bartel, S. Inoue, T. Henrich, J. Wittbrodt,… . - 10 S.
  In: Oncogene, ISSN 1476-5594. 34(2015), 46, S. 5729-5738
  DOI: 10.1038/onc.2015.21
• Lust, Katharina; Wittbrodt, Joachim: Hold your breath! / Katharina Lust and Joachim Wittbrodt
  In: eLife, ISSN 2050-084X. 4(2015) Artikel-Nr. e05216, 3 Seiten
  DOI: 10.7554/eLife.12523
• Stemmer, Manuel; Schuhmacher, Laura-Nadine; Foulkes, Nicholas S.; Bertolucci, Cristiano; Wittbrodt, Joachim: Cavefish eye loss in response to an early block in retinal differentiation progression / Manuel Stemmer, Laura-Nadine Schuhmacher, Nicholas S. Foulkes, Cristiano Bertolucci, and Joachim Wit… . - 10 S.
  In: Development, ISSN 1477-9129. 142(2015), 4, S. 743-752
  DOI: 10.1242/dev.114629
• Dolle, Dirk-Dominik; Mateo, Juan L.; Eichenlaub, Michael P.; Sinn, Rebecca; Reinhardt, Robert; Höckendorf, Burkhard; Inoue, Daigo; Centanin, Lázaro; Wittbrodt, Joachim: Handling permutation in sequence comparison: genome-wide enhancer prediction in vertebrates by a novel non-linear alignment scoring principle / Dirk Dolle, Juan L. Mateo, Michael P. Eichenlaub, Rebecca Sinn, Robert Reinhardt, Burkhard Höckend… , October 27, 2015. - 25 S.
  In: PLOS ONE, ISSN 1932-6203. 10(2015,10) Artikel-Nummer e0141487, 25 Seiten
  DOI: 10.1371/journal.pone.0141487
• Stemmer, Manuel; Thumberger, Thomas; Sol Keyer, María del; Wittbrodt, Joachim; Mateo, Juan L.: CCTop : an intuitive, flexible and reliable CRISPR/Cas9 target prediction tool / Manuel Stemmer ; Thomas Thumberger ; Maria del Sol Keyer ; Joachim Wittbrodt ; Juan L. Mateo
  In: PLOS ONE, ISSN 1932-6203. 10(2015,4) Artikel-Nr. e0124633, 11 S.
  DOI: 10.1371/journal.pone.0124633
• Wittbrodt, Joachim: Stammzellforschung anhand von Fischaugen / Joachim Wittbrodt. -
  Heidelberg: Universitätsbibliothek Heidelberg, 2015. - Online-Ressource
  (Campus-Report bei Uni-Radio Baden ; 23. April 2015)
• Heermann, Stephan; Schütz, Lucas; Lemke, Steffen; Wittbrodt, Joachim: Eye morphogenesis driven by epithelial flow into the optic cup facilitated by modulation of bone morphogenetic protein / Stephan Heermann, Lucas Schütz, Steffen Lemke, Kerstin Krieglstein, Joachim Wittbrodt
  In: eLife, ISSN 2050-084X. 4(2015) Artikel-Nr. e05216, 17 S.
  DOI: 10.7554/eLife.05216

2014

• Centanin, Lázaro; Wittbrodt, Joachim: Retinal neurogenesis / Lázaro Centanin and Joachim Wittbrodt. - 4 S.
  In: Development, ISSN 1477-9129. 141(2014), 2, S. 241-244
  DOI: 10.1242/dev.083642
• Spivakov, Mikhail; Auer, Thomas; Dolle, Dirk-Dominik; Wittbrodt, Joachim: Genomic and phenotypic characterization of a wild medaka population : towards the establishment of an isogenic population genetic resource in fish / Mikhail Spivakov, Thomas O. Auer, Ravindra Peravali, Ian Dunham, Dirk Dolle, Asao Fujiyama, Atsushi … , 2014. - 13 S.
  In: G3: Genes, genomes, genetics, ISSN 2160-1836. 4(2014), 3, Seite 433-445
  DOI: 10.1534/g3.113.008722
• Mazaheri, Fargol; Haas, Petra; Wittbrodt, Joachim: Distinct roles for BAI1 and TIM-4 in the engulfment of dying neurons by microglia / Fargol Mazaheri, Oksana Breus, Sevi Durdu, Petra Haas, Jochen Wittbrodt, Darren Gilmour & Francesca …
  In: Nature Communications, ISSN 2041-1723. 5(2014) Artikel-Nr. 4046, 11 Seiten
  DOI: 10.1038/ncomms5046
• Tena, Juan J.; Wittbrodt, Joachim: Comparative epigenomics in distantly related teleost species identifies conserved cis-regulatory nodes active during the vertebrate phylotypic period / Juan J. Tena, Cristina González-Aguilera, Ana Fernández-Miñán, Javier Vázquez-Marín, Helena Parra-Ac… . - 11 S.
  In: Genome research, ISSN 1549-5469. 24(2014), 7, S. 1075-1085
  DOI: 10.1101/gr.163915.113
• Sinn, Rebecca; Heermann, Stephan; Wittbrodt, Joachim: Differential responsiveness of distinct retinal domains to Atoh7 / Rebecca Sinn, Ravindra Peravali, Stephan Heermann, Joachim Wittbrodt, 21 August 2014. - 12 S.
  In: Mechanisms of development, ISSN 1872-6356. 133(2014), Seite 218-229
  DOI: 10.1016/j.mod.2014.08.002
• Centanin, Lázaro; Ander, Janina-Jacqueline; Höckendorf, Burkhard; Lust, Katharina; Kellner, Tanja; Krämer, Isabel; Urbany, Cedric; Hasel, Eva Mareike; Wittbrodt, Joachim: Exclusive multipotency and preferential asymmetric divisions in post-embryonic neural stem cells of the fish retina / Lázaro Centanin, Janina-J. Ander, Burkhard Hoeckendorf, Katharina Lust, Tanja Kellner, Isabel Kraeme… . - 11 S.
  In: Development, ISSN 1477-9129. 141(2014), 18, S. 3472-3482
  DOI: 10.1242/dev.109892
• Chen, Qing; Ramialison, Mirana; Wittbrodt, Joachim: Tyrosine phosphorylation of LRP6 by Src and Fer inhibits Wnt/β‐catenin signalling / Qing Chen, Yi Su, Janine Wesslowski, Anja I. Hagemann, Mirana Ramialison, Joachim Wittbrodt, Steffen… . - 14 S.
  In: EMBO reports, ISSN 1469-3178. 15(2014), 12, S. 1254-1267
  DOI: 10.15252/embr.201439644

2013

• Kirchmaier, Stephan; Lust, Katharina; Wittbrodt, Joachim: Golden GATEway cloning : a combinatorial approach to generate fusion and recombination constructs / Stephan Kirchmaier, Katharina Lust, Joachim Wittbrodt
  In: PLOS ONE, ISSN 1932-6203. 8(2013,10) Artikel-Nummer e76117, 9 Seiten
  DOI: 10.1371/journal.pone.0076117
• Sinn, Rebecca; Wittbrodt, Joachim: An eye on eye development / Rebecca Sinn, Joachim Wittbrodt, 15 May 2013. - 12 S.
  In: Mechanisms of development, ISSN 1872-6356. 130(2013), 6/8, Seite 347-358
  DOI: 10.1016/j.mod.2013.05.001
• Volbehr, Ute; Wittbrodt, Joachim: MoD special issue on molecular and cellular bases of neural development / Ute Volbehr, Joachim Wittbrodt. - 1 S.
  In: Mechanisms of development, ISSN 1872-6356. 130(2013), 6/8, S. 323
  DOI: 10.1016/j.mod.2013.05.003
• Herder, Cathrin; Loosli, Claudia; Wittbrodt, Joachim: ArhGEF18 regulates RhoA-Rock2 signaling to maintain neuro-epithelial apico-basal polarity and proliferation / Cathrin Herder, Jakub M. Swiercz, Claudia Müller, Ravindra Peravali, Rebecca Quiring, Stefan Offerma… . - 11 S.
  In: Development, ISSN 1477-9129. 140(2013), 13, S. 2787-2797
  DOI: 10.1242/dev.096487
• Martynoga, Ben; Mateo, Juan L.; Wittbrodt, Joachim; Ettwiller, Laurence: Epigenomic enhancer annotation reveals a key role for NFIX in neural stem cell quiescence / Ben Martynoga, Juan L. Mateo, Bo Zhou, Jimena Andersen, Angeliki Achimastou, Noelia Urbán, Debbie va… . - 8 S.
  In: Genes & development, ISSN 1549-5477. 27(2013), 16, S. 1769-1786
  DOI: 10.1101/gad.216804.113
• Kirchmaier, Stephan; Höckendorf, Burkhard; Möller, Eva Katharina; Bornhorst, Dorothee; Wittbrodt, Joachim: Efficient site-specific transgenesis and enhancer activity tests in medaka using PhiC31 integrase / Stephan Kirchmaier, Burkhard Höckendorf, Eva Katharina Möller, Dorothee Bornhorst, Francois Spitz an… . - 9 S.
  In: Development, ISSN 1477-9129. 140(2013), 20, S. 4287-4295
  DOI: 10.1242/dev.096081
• Loosli, Claudia; Wittbrodt, Joachim: The medaka mutation tintachina sheds light on the evolution of V-ATPase B subunits in vertebrates / Claudia Müller, Ignacio Maeso, Joachim Wittbrodt & Juan R. Martínez-Morales
  In: Scientific reports, ISSN 2045-2322. 3(2013) Artikel-Nr. 3217, 7 Seiten
  DOI: 10.1038/srep03217
• Schaafhausen, Maximilian K.; Centanin, Lázaro; Wittbrodt, Joachim; Fischer, Andreas: Tumor angiogenesis is caused by single melanoma cells in a manner dependent on reactive oxygen species and NF-kappa B / Maximilian K. Schaafhausen, Wan-Jen Yang, Lazaro Centanin, Joachim Wittbrodt, Anja Bosserhoff, Andre… , 2013. - 11 S.
  In: Journal of cell science, ISSN 1477-9137. 126(2013), 17, Seite 3862-3872
  DOI: 10.1242/jcs.125021
• Wittbrodt, Joachim: Am Anfang war die Zelle : Chaos als Ordnungsprinzip / Joachim Wittbrodt. - 8 S.
  In: Ruperto Carola. 3(2013), S. 102-109
• Bärenz, Felix; Ruppert, Thomas; Wittbrodt, Joachim; Gruss, Oliver; Yokoyama, Hideki; Dräger-Meurer, Stefanie; Merker, Sabine; Klinger, Maren; Höckendorf, Burkhard; Pilz, Sahra; Steinbeisser, Herbert; Lorenz, Holger: The centriolar satellite protein SSX2IP promotes centrosome maturation / Felix Bärenz, Daigo Inoue, Hideki Yokoyama, Justus Tegha-Dunghu, Stephanie Freiss, Stefanie Draeger,… , 2013. - 15 S.
  In: The journal of cell biology, ISSN 1540-8140. 202(2013), 1, Seite 81-95
  DOI: 10.1083/jcb.201302122

2012

• Dunham, Ian; Auer, Thomas; Centanin, Lázaro; Eichenlaub, Michael P.; Gruhl, Franziska; Heermann, Stephan; Höckendorf, Burkhard; Inoue, Daigo; Kellner, Tanja; Kirchmaier, Stephan; Loosli, Claudia; Reinhardt, Robert; Schertel, Lea; Schneider-Boutros, Stephanie; Sinn, Rebecca; Wittbrodt, Beate; Wittbrodt, Joachim: An integrated encyclopedia of DNA elements in the human genome / the ENCODE Project Consortium, 05 September 2012. - 18 S.
  In: Nature, ISSN 1476-4687. 489(2012), 7414, Seite 57-74
  DOI: 10.1038/nature11247
• Wittbrodt, Joachim; Hell, Rüdiger; Lohmann, Jan U.; Holstein, Thomas W.: Centre for Organismal Studies (COS) Heidelberg / Joachim Wittbrodt, Rüdiger Hell, Jan Lohmann, and Thomas W. Holstein. - 2 S.
  In: Wissenschaftsatlas of Heidelberg University. (2012), S. 228-229
• Ramialison, Mirana; Reinhardt, Robert; Wittbrodt, Beate; Kellner, Tanja; Lowy, Camille; Wittbrodt, Joachim: Cis-regulatory properties of medaka synexpression groups / Mirana Ramialison, Robert Reinhardt, Thorsten Henrich, Beate Wittbrodt, Tanja Kellner, Camille M. Lo… . - 12 S.
  In: Development, ISSN 1477-9129. 139(2012), 5, S. 917-928
  DOI: 10.1242/dev.071803
• Harden, Maegan V.; Ramialison, Mirana; Wittbrodt, Joachim: Close association of olfactory placode precursors and cranial neural crest cells does not predestine cell mixing / Maegan V. Harden, Luisa Pereiro, Mirana Ramialison, Jochen Wittbrodt, Megana K. Prasad, Andrew S. Mc… . - 12 S.
  In: Developmental dynamics, ISSN 1097-0177. 241(2012), 7, S. 1143-1154
  DOI: 10.1002/dvdy.23797
• Schulz, Sarah; Chachami, Georgia; Winter, Ulrike; Stankovic-Valentin, Nicolas; Haas, Petra; Wittbrodt, Joachim; Meulmeester, Erik; Melchior, Frauke: Ubiquitin‐specific protease‐like 1 (USPL1) is a SUMO isopeptidase with essential, non‐catalytic functions / Sarah Schulz, Georgia Chachami, Lukasz Kozaczkiewicz, Ulrike Winter, Nicolas Stankovic‐Valentin, Pet… , 10 August 2012. - 9 S.
  In: EMBO reports, ISSN 1469-3178. 13(2012), 10, Seite 930-938
  DOI: 10.1038/embor.2012.125
• Bogdanović, Ozren; Wittbrodt, Joachim: Numb/Numbl-Opo antagonism controls retinal epithelium morphogenesis by regulating integrin endocytosis / Ozren Bogdanović, Mariana Delfino-Machín, María Nicolás-Pérez, María P. Gavilán, Inês Gago-Rodrigues… , October 4, 2012. - 14 S.
  In: Developmental cell, ISSN 1878-1551. 23(2012), 4, Seite 782-795
  DOI: 10.1016/j.devcel.2012.09.004
• Alten, Leonie; Eichenlaub, Michael P.; Wittbrodt, Beate; Wittbrodt, Joachim: A novel mammal-specific three partite enhancer element regulates node and notochord-specific noto expression / Leonie Alten, Karin Schuster-Gossler, Michael P. Eichenlaub, Beate Wittbrodt, Joachim Wittbrodt, Ach…
  In: PLOS ONE, ISSN 1932-6203. 7(2012,10) Artikel-Nr. e47785, 11 Seiten
  DOI: 10.1371/journal.pone.0047785
• Höckendorf, Burkhard; Thumberger, Thomas; Wittbrodt, Joachim: Quantitative analysis of embryogenesis : a perspective for light sheet microscopy / Burkhard Höckendorf, Thomas Thumberger, and Joachim Wittbrodt. - 10 S.
  In: Developmental cell, ISSN 1878-1551. 23(2012), 6, S. 1111-1120
  DOI: 10.1016/j.devcel.2012.10.008
• Kausler, Bernhard; Schiegg, Martin; Andres, Björn; Köthe, Ullrich; Leitte, Heike; Wittbrodt, Joachim; Hamprecht, Fred: A discrete chain graph model for 3d+t cell tracking with high misdetection robustness / Bernhard X. Kausler, Martin Schiegg, Bjoern Andres, Martin Lindner, Ullrich Koethe, Heike Leitte, Jo… , 2012. - 14 S.
  In: Computer Vision - ECCV 2012. (2012), Seite 144-157
  DOI: 10.1007/978-3-642-33712-3_11
• Fangerau, Jens; Höckendorf, Burkhard; Wittbrodt, Joachim; Leitte, Heike: Similarity analysis of cell movements in video microscopy / J. Fangerau, B. Höckendorf, J. Wittbrodt, H. Leitte, 2012. - 8 S.
  In: Biological Data Visualization (BioVis), 2012 IEEE Symposium on. (2012), Seite 69-76
  DOI: 10.1109/BioVis.2012.6378595

2011

• Maurya, Ashish K.; Souren, Marcel; Wittbrodt, Joachim: Integration of hedgehog and BMP signalling by the engrailed2a gene in the zebrafish myotome / Ashish K. Maurya, Haihan Tan, Marcel Souren, Xingang Wang, Joachim Wittbrodt and Philip W. Ingham. - 11 S.
  In: Development, ISSN 1477-9129. 138(2011), 4, S. 755-765
  DOI: 10.1242/dev.062521
• Keller, Philipp J.; Schmidt, Annette D.; Wittbrodt, Joachim; Stelzer, Ernst H. K.: Digital scanned laser light-sheet fluorescence microscopy (DSLM) of zebrafish and drosophila embryonic development / Philipp J. Keller, Annette D. Schmidt, Jochen Wittbrodt, Ernst H.K. Stelzer, 2011. - ? S.
  In: Cold Spring Harbor protocols, ISSN 1559-6095. (2011), 10, Seite ?
  DOI: 10.1101/pdb.prot065839
• Mongin, Emmanuel; Auer, Thomas; Gruhl, Franziska; Wittbrodt, Joachim; Ettwiller, Laurence: Combining computational prediction of cis-regulatory elements with a new enhancer assay to efficiently label neuronal structures in the Medaka fish / Emmanuel Mongin, Thomas O. Auer, Franck Bourrat, Franziska Gruhl, Ken Dewar, Mathieu Blanchette, Joa… , May 27, 2011
  In: PLOS ONE, ISSN 1932-6203. 6(2011,5) Artikel-Nummer e0019747, 10 Seiten
  DOI: 10.1371/journal.pone.0019747
• Inoue, Daigo; Wittbrodt, Joachim: One for all : a highly efficient and versatile method for fluorescent immunostaining in fish embryos / Daigo Inoue, Joachim Wittbrodt, May 13, 2011. - 7 S.
  In: PLOS ONE, ISSN 1932-6203. 6(2011,5) Artikel-Nummer e19713, 7 Seiten
  DOI: 10.1371/journal.pone.0019713
• Wittbrodt, Joachim; Hell, Rüdiger; Lohmann, Jan U.; Holstein, Thomas W.: Centre for Organismal Studies (COS) Heidelberg / Joachim Wittbrodt, Rüdiger Hell, Jan Lohmann und Thomas W. Holstein. - 2 S.
  In: Wissenschaftsatlas der Universität Heidelberg. (2011), S. 228-229
• Centanin, Lázaro; Höckendorf, Burkhard; Wittbrodt, Joachim: Fate restriction and multipotency in retinal stem cells / Lázaro Centanin, Burkhard Hoeckendorf, and Joachim Wittbrodt, December 1, 2011. - 10 S.
  In: Cell stem cell, ISSN 1875-9777. 9(2011), 6, Seite 553-562
  DOI: 10.1016/j.stem.2011.11.004

2010

• Keller, Philipp J.; Schmidt, Annette D.; Wittbrodt, Joachim; Stelzer, Ernst H. K.: Fast, high-contrast imaging of animal development with scanned light sheet-based structured-illumination microscopy / Philipp J. Keller, Annette D. Schmidt, Anthony Santella, Khaled Khairy, Zhirong Bao, Joachim Wittbro… . - 6 S.
  In: Nature methods, ISSN 1548-7105. 7(2010), 8, S. 637-642
  DOI: 10.1038/nmeth.1476
• Haudry, Yannick; Ramialison, Mirana; Wittbrodt, Joachim; Ettwiller, Laurence: Using Trawler_standalone to discover overrepresented motifs in DNA and RNA sequences derived from various experiments including chromatin immunoprecipitation / Yannick Haudry, Mirana Ramialison, Benedict Paten, Joachim Wittbrodt, Laurence Ettwiller. - 12 S.
  In: Nature protocols, ISSN 1754-2189. 5(2010), 2, S. 323-334
• Haudry, Yannick; Ramialison, Mirana; Wittbrodt, Joachim; Ettwiller, Laurence: Using Trawler_standalone to discover overrepresented motifs in DNA and RNA sequences derived from various experiments including chromatin immunoprecipitation / Yannick Haudry, Mirana Ramialison, Benedict Paten, Joachim Wittbrodt, Laurence Ettwiller. - 12 S.
  In: Nature protocols, ISSN 1750-2799. 5(2010), 2, S. 323-334
  DOI: 10.1038/nprot.2009.158
• Wittbrodt, Joachim: Hochleistungsfähiges Mikroskopiesystem am Institut für Zoologie / Campus-TV. Joachim Wittbrodt. -
  [Heidelberg]: Institut für Zoologie, 2010. - Online-Ressource
• Browne, Katherine E.; Wittbrodt, Joachim: Nlcam modulates midline convergence during anterior neural plate morphogenesis / Katherine E. Brown, Philipp J. Keller, Mirana Ramialison, Martina Rembold, Ernst H.K. Stelzer, Felix… . - 12 S.
  In: Developmental biology, ISSN 1095-564X. 339(2010), 1, S. 14-25
  DOI: 10.1016/j.ydbio.2009.12.003

2008

• Ettwiller, Laurence; Wittbrodt, Joachim: Analysis of mammalian gene batteries reveals both stable ancestral cores and highly dynamic regulatory sequences / Laurence Ettwiller, Aidan Budd, François Spitz, Joachim Wittbrodt
  In: Genome biology, ISSN 1474-760X. 9(2008) Artikelnummer R172, 10 Seiten
  DOI: 10.1186/gb-2008-9-12-r172
• Ramialison, Mirana; Aghaallaei, Nargessadat; Ettwiller, Laurence; Wittbrodt, Beate; Wittbrodt, Joachim: Rapid identification of PAX2/5/8 direct downstream targets in the otic vesicle by combinatorial use of bioinformatics tools / Mirana Ramialison, Baubak Bajoghli, Narges Aghaallaei, Laurence Ettwiller, Sylvain Gaudan, Beate Wit…
  In: Genome biology, ISSN 1474-760X. 9(2008) Artikelnummer R145, 11 Seiten
  DOI: 10.1186/gb-2008-9-10-r145
• Haudry, Yannick; Bork, Peer; Wittbrodt, Joachim: 4D Xpress : a database for cross-species expression pattern comparisons / Yannick Haudry, Hugo Berube, Ivica Letunic, Paul-Daniel Weeber, Julien Gagneur, Charles Girardot, Mi… . - 7 S.
  In: Nucleic acids research, ISSN 1362-4962. 36(2008), suppl_1, S. D847-D853
  DOI: 10.1093/nar/gkm797

2007

• Steinmetz, Patrick R. H.; Wittbrodt, Joachim; Arendt, Detlev: Polychaete trunk neuroectoderm converges and extends by mediolateral cell intercalation / Patrick R.H. Steinmetz, Fabiola Zelada-Gonzáles, Carola Burgtorf, Joachim Wittbrodt, and Detlev Aren… . - 6 S.
  In: Proceedings of the National Academy of Sciences of the United States of America, ISSN 1091-6490. 104(2007), 8, S. 2727-2732
  DOI: 10.1073/pnas.0606589104
• Del Bene, Filippo; Ettwiller, Laurence; Wittbrodt, Joachim: In vivo validation of a computationally predicted conserved Ath5 Target Gene Set / Filippo Del Bene, Laurence Ettwiller, Dorota Skowronska-Krawczyk, Herwig Baier, Jean-Marc Matter, Ew…
  In: PLoS Genetics, ISSN 1553-7404. 3(2007) Artikelnummer e159, 10 Seiten
  DOI: 10.1371/journal.pgen.0030159
• Ettwiller, Laurence; Ramialison, Mirana; Wittbrodt, Joachim: Trawler : de novo regulatory motif discovery pipeline for chromatin immunoprecipitation / Laurence Ettwiller, Benedict Paten, Mirana Ramialison, Ewan Birney, Joachim Wittbrodt. - 3 S.
  In: Nature methods, ISSN 1548-7091. 4(2007), 7, S. 563-565
• Ettwiller, Laurence; Ramialison, Mirana; Wittbrodt, Joachim: Trawler : de novo regulatory motif discovery pipeline for chromatin immunoprecipitation / Laurence Ettwiller, Benedict Paten, Mirana Ramialison, Ewan Birney, Joachim Wittbrodt. - 3 S.
  In: Nature methods, ISSN 1548-7105. 4(2007), 7, S. 563-565
  DOI: 10.1038/nmeth1061

2005

• Fritzsch, Bernd; Wittbrodt, Joachim; Arendt, Detlev: Ancestry of photic and mechanic sensation? / Bernd Fritzsch, Joram Piatigorsky, Kristin Tessmar-Raible, Gáspár Jékely, Guy Keren, Florian Raible,… . - 2 S.
  In: Science, ISSN 1095-9203. 308(2005), 5725, S. 1113-1114
  DOI: 10.1126/science.308.5725.1113
• Ettwiller, Laurence; Wittbrodt, Joachim: The discovery, positioning and verification of a set of transcription-associated motifs in vertebrates / Laurence Ettwiller, Benedict Paten, Marcel Souren, Felix Loosli, Jochen Wittbrodt and Ewan Birney
  In: Genome biology, ISSN 1474-760X. 6(2005) Artikel-Nummer R104, 14 Seiten
  DOI: 10.1186/gb-2005-6-12-r104

2004

• Arendt, Detlev; Wittbrodt, Joachim: Ciliary photoreceptors with a vertebrate-type opsin in an invertebrate brain / Detlev Arendt, Kristin Tessmar-Raible, Heidi Snyman, Adriaan W. Dorresteijn, Joachim Wittbrodt. - 3 S.
  In: Science, ISSN 1095-9203. 306(2004), 5697, S. 869-871
  DOI: 10.1126/science.1099955
• Poggi, Lucia; Wittbrodt, Joachim: The homeobox gene Xbh1 cooperates with proneural genes to specify ganglion cell fate within the Xenopus neural retina / Lucia Poggi, Teresa Vottari, Giuseppina Barsacchi, Joachim Wittbrodt, Robert Vignali. - 11 S.
  In: Development, ISSN 1477-9129. 131(2004), 10, S. 2305-2315
  DOI: 10.1242/dev.01099

2002

• Wittbrodt, Joachim; Shima, Akihiro; Schartl, Manfred: Medaka : a model organism from the far east / Joachim Wittbrodt, Akihiro Shima, Manfred Schartl. - 12 S.
  In: Nature reviews, ISSN 1471-0064. 3(2002), 1, S. 53-64
  DOI: 10.1038/nrg704

2001

• Arendt, Detlev; Wittbrodt, Joachim: Reconstructing the eyes of Urbilateria / Detlev Arendt, Joachim Wittbrodt. - 19 S.
  In: Philosophical transactions, ISSN 1471-2970. 356(2001), 1414, S. 1545-1563
  DOI: 10.1098/rstb.2001.0971
• Arendt, Detlev; Technau, Ulrich; Wittbrodt, Joachim: Evolution of the bilaterian larval foregut / Detlev Arendt, Ulrich Technau, Joachim Wittbrodt. - 5 S.
  In: Nature, ISSN 1476-4687. 409(2001), 6816, S. 81-85
  DOI: 10.1038/35051075

1989

• Wittbrodt, Joachim: Novel putative receptor tyrosine kinase encoded by the melanoma-inducing Tu locus in Xiphophorus / Joachim Wittbrodt, Dieter Adam, Barbara Malitschek, Winfried Mäueler, Friedrich Raulf, Agnes Telling… . - 7 S.
  In: Nature, ISSN 1476-4687. 341(1989), 6241, S. 415-421
  DOI: 10.1038/341415a0

ohne Angabe

• Crespo, Carolina Lage; Wittbrodt, Joachim: The PAR complex controls the spatiotemporal dynamics of F-actin and the MTOC in directionally migrating leukocytes / Carolina Lage Crespo, Claudio Vernieri, Philipp J. Keller, Massimiliano Garrè, Jeffrey R. Bender, Jo… . - 15 S.
  DOI: 10.1242/jcs.146217